Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_012492.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq19028 295 1e-76 >seq19028 Length=31091 Score = 295 bits (326), Expect = 1e-76 Identities = 515/739 (70%), Gaps = 29/739 (4%) Strand=Plus/Plus Query 1594 GTGAGGGTGAAGAATTCTGCATTCTTTAT-GCCCAGATCTTTTAGTGCTGAATTCTTTTC 1652 |||| |||| ||||||||||||| | | | ||| || ||||| | ||| ||||| Sbjct 13777 GTGATGGTGTAGAATTCTGCATTATGCAAAGACCA-ATTTTTTAATTTAATATTTTTTTC 13835 Query 1653 CTCATCCAAGTACTCTTTATATGATGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGG 1712 ||| || | | |||||||||| || || || || |||||||| | |||||| || || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1713 AATTCCACCTTTAATTTGCATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTG 1772 || ||||| || || | | ||| | ||||| ||| ||||| ||| | ||||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTG 13955 Query 1773 GGCCCCCATGAACTCCTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTT 1832 ||||||||| ||||| ||||||||||||||||| || |||||||||| |||||||| ||| Sbjct 13956 GGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTT 14015 Query 1833 GTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGTT 1892 |||||||||| ||| || | || | ||| || | ||||| |||| || || Sbjct 14016 ATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATT 14075 Query 1893 ATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGAC 1952 |||||| || | ||| || |||||| ||||||||||||||| ||||||||| ||||| Sbjct 14076 ATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGAC 14135 Query 1953 TATACTGACGGGTC-TCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGATACCCAGC 2011 ||||| ||||| | | |||||||||||||||||||| |||||||| | | |||||| Sbjct 14136 AATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGC 14195 Query 2012 ATTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAGGGAGAAACAAAAACCT 2071 | |||| ||| | ||| |||||| | ||| ||| |||| || | Sbjct 14196 ACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTT 14241 Query 2072 CTAAAGGA-GGTGCA--AAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAGTA 2128 | |||| || ||| || || | |||||| || | | || ||||||| |||| | | Sbjct 14242 C---AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAA--A 14296 Query 2129 CATAATCTTTG--GGTGCTAATTCCTTAATGACTCTAAGAGCCTC-TGACTTACTGCTTG 2185 | || ||||| || | ||| |||| | ||| || || | | || || | | Sbjct 14297 TAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATG-TAG 14355 Query 2186 CGTTAAGTGCTGTGGCGTAAGCGTCATTGGCTGTCTGTTGACCCCCTCTTGCAGATCTTC 2245 | | | ||| || | | ||||| | ||| ||| ||| ||||| ||||||| || Sbjct 14356 CACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTC 14415 Query 2246 CATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGA 2305 ||||||| ||||| | ||||||||| | || | ||| ||| | | || ||| | Sbjct 14416 CATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAA 14475 Query 2306 CGTCTGAGCTTGATTTAGC 2324 | ||||| ||||||||| Sbjct 14476 CATCTGAAGATGATTTAGC 14494 Score = 170 bits (188), Expect = 3e-39 Identities = 281/392 (72%), Gaps = 14/392 (4%) Strand=Plus/Plus Query 958 TCATACTGAGAACGCTCTTCTAATGTATATGGCATGTACACATGCCAGTAATCCTGTGTA 1017 ||||||||| || || || | ||||||| | || ||||| ||||||||| || Sbjct 13083 TCATACTGAAAATGCA-TTGT--TGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1018 TGCAACTTTGAAGATCA-GAATCTATTTTTATGATTCTGT-TCAGAATTAATAAATATTG 1075 | ||| ||| || || | | ||||||||||| ||| ||| ||||||||||||||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1076 AATTTTATTATATGGGAT--AATTCGGCATCAATTGTGCCTTCTAATACATTGTACAATA 1133 ||||||||| ||| || || | |||| | ||| || | ||||||| | |||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTA--CATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1134 CATGAGACATTGCCCTAATTACATTATTAATACTAATAACTCCTAAACTATTTAAATATT 1193 ||| | || ||||| | ||| |||||||||||||| ||||| | | |||| ||| Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1194 TCA-TACATTGATATTTAAATACTCTTAAGAAACGCCAAGTCTGAGGACGTAAACGAGTC 1252 ||| |||| || |||||||||||||||||||| | ||| ||||||||||||||||| Sbjct 13316 TCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1253 CAGATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTG 1312 | ||| | | | || ||| | ||| | || | ||||||||||||| |||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1313 AACTGGACTTGTATGGTGATTATGTC-GTTGT 1343 || | | |||||| ||||||||| ||||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCGGTTGT 13466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694469728324