Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_012553.1 Length=2609 Score E Sequences producing significant alignments: (Bits) Value seq19028 176 7e-41 >seq19028 Length=31091 Score = 176 bits (194), Expect = 7e-41 Identities = 246/342 (72%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 1550 GAGGAAGTCTTTATAACTAGCCCCCTCGCCTGGATTGCACAGCACGATTGATGGTATCCC 1609 |||||| |||||||| || | || |||||||||| | ||||| |||||||| Sbjct 13842 GAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCC 13901 Query 1610 GCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTG--CCAGTCCCTTTGGGCC 1667 || || || | || ||| |||| ||||| ||| ||| ||| | ||||||||| Sbjct 13902 ACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGACCAATTGCTTTGGGCC 13959 Query 1668 CCAATCAACTCTTTCCAATGCTTTAACTTTAGATAATGCGGAGCGACATCATCAATGACG 1727 || || |||||||| | |||||| |||||||||||| |||| | |||||||| | Sbjct 13960 CCCATAAACTCTTTAAAGTGCTTT------AGATAATGCGGATCGACGTTATCAATGATG 14013 Query 1728 TTATACTCAACGTCATTTGAGTAAACCCTAGAATTGAAATCGAGATGCCCACTAAGATAA 1787 |||||| | | |||||| |||| || ||| ||||| | ||| || | || ||| Sbjct 14014 TTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAA 14073 Query 1788 TTATGTGGGCCTAAAGCTCTAGCCCACATGGTCTTTCCCGTTCGACTATCCCCCTCGACT 1847 |||||||| ||||||| ||| |||||| ||||| || |||| | || ||||| | Sbjct 14074 TTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATG 14133 Query 1848 ACAATACTAATAGGTC-TCTCTGGCCGCGCAGCGGCACCCCT 1888 |||||||| | |||| | |||||||||||||||| |||| Sbjct 14134 ACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT 14175 Score = 113 bits (124), Expect = 7e-22 Identities = 234/345 (68%), Gaps = 29/345 (8%) Strand=Plus/Plus Query 904 ACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAATTCGGATCTATTTTTATGATTCG 963 |||||||| ||||||||||||||| || ||| || || | ||||||||||| Sbjct 13117 ACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGT 13176 Query 964 ATAACAAATTAATAAAAATTGAATTTTATTTCATGATTCTCGAGTACA------------ 1011 || |||||||||||| |||||||||||||||||||| || |||||| Sbjct 13177 GTATCAAATTAATAAATATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGC 13236 Query 1012 TCATTTACATATGAGCGATCAGTTGCGAAACGAACAGCCCTAATTACATGATTAAGACCG 1071 ||| |||||| ||| || ||| ||||| ||||| | || |||| || Sbjct 13237 TCAATTACAT-TGAATAATACATTG-----TCTACAGCTCTAATAATATTGTTAATACTA 13290 Query 1072 ACGACACCCAATTGATCTAAA---TACATTAAAACTAAATGCCTGAATCTACTTAA-ATA 1127 | ||||| ||| | |||||| | |||| | || |||| | ||| ||||| | | Sbjct 13291 ATAACACCTAATCGGTCTAAAAATTTCATT-ACACGAAAT--TTAAATACTCTTAAGAAA 13347 Query 1128 AGTCATCCCAGAAGCTCGAATCGATGTCGTCCAGACTTGGAAGTTCAGGAAAGCTTTGCG 1187 | || | || | || ||| |||| || | |||||| |||||||||||| | Sbjct 13348 ACGTATGTCGGAGGACGTAAACGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTG 13403 Query 1188 TAGATTCAGTGCCCTCCTGAGGTTGTAATTGAACCGGATCTGGAT 1232 ||||||||| || |||| ||||||| ||||| || || || || Sbjct 13404 AAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8237034418850