Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_012786.1 Length=2672 Score E Sequences producing significant alignments: (Bits) Value seq19028 152 9e-34 >seq19028 Length=31091 Score = 152 bits (168), Expect = 9e-34 Identities = 545/836 (65%), Gaps = 47/836 (6%) Strand=Plus/Plus Query 1560 TTTTCCTCTTTGTCGAGGAAGTCTTTATAGCTGGACCCTTCCCCTGGATTACAGAGCACG 1619 |||||||| | ||||||| |||||||||||||| || ||||| || | | | Sbjct 13831 TTTTCCTCCT---CGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1620 ATTGAAGGAACTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTG--CC 1677 |||| || | ||||| || || | || ||| |||||||||| ||| ||| || Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGACC 13945 Query 1678 AGTCCCTTTGGGCCCCAATGAGTTCCTTCCAGTGCTTCATTTTCAGATAATGTGGGCTAA 1737 | | ||||||||||| || | || || ||||||| | ||||||| || | Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTA------GATAATGCGGATCGA 13999 Query 1738 TGTCATCAATGACGTTATATTCCACG--TCATTTGAATAAACCCTGGAATTGAAATCCAA 1795 || |||||||| |||||| ||| | | ||||||||||| | ||| ||||| || Sbjct 14000 CGTTATCAATGATGTTATA--CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAA 14057 Query 1796 GTGTCCACTAAGATAATTATGGACTCCTAATGAACGAGCCCACATTGTCTTCCCCGTTCG 1855 || || | || |||||||| |||||| || | |||||| ||||||||| |||| Sbjct 14058 ATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCT 14117 Query 1856 ACTATCACCCTCGATGATAATACTAATAGCTCGTTCA-GGCCGCGCAGCGGCATCAAGCC 1914 | |||||||| |||| |||||| | | ||||| | ||||||||||||||||| || Sbjct 14118 AGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATC---CC 14174 Query 1915 CAAAATATGAATCAGCCCACTCTTGCATCTCCTCTGGAACAAGAGTGAATGAGGAGAGGG 1974 || || | | | ||||| ||| ||| || |||| || || Sbjct 14175 TAACATTTTCAGCTGCCCA-----GCA-CTCAATTG--------TTGAAGGAAGAACAAC 14220 Query 1975 GAAACGGAGGAACAAACGGTTCTGGAGCCTTTTGAAAAATGCGTTCTAAATTTGAACGGA 2034 ||| ||| |||| | ||||| |||| || || || ||||| |||| | | Sbjct 14221 TAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTA 14280 Query 2035 TATTATGATGTTGAAGGACAAAATCTTTG--GGTTGTTCCTCTCTCAGTATATTGAGGGC 2092 ||||||||| ||||| | | || ||||| || || ||||| | ||| || || Sbjct 14281 TATTATGATATTGAA--ATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGC 14338 Query 2093 CTCCATGACTGATCCTGAATTGAGGACCTTGGCATACGTGTCGTTGGCAGATTGCTGACC 2152 || | |||| | | | | | | ||| | || || | | || ||| Sbjct 14339 TTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACC 14398 Query 2153 TCCTCTAGCAGATCTGCCGTCGATTTGGAAAATTCCATGATCAATGAAGTCTCCGTCTTT 2212 |||||||||||||| || |||||||| ||| | || || || | || | |||||| Sbjct 14399 TCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTT 14458 Query 2213 CTCCACATAGGTCTTGACGTCTGAAGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATG 2272 | | | || |||| || |||||||| ||||| || | ||| || ||| ||| Sbjct 14459 CGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATG 14517 Query 2273 TGTTGACCTAGT-TGTGGA--GACGAGGTCGAAGAATCTGTTATTTTGGCAATTGT-ATT 2328 || || ||||| | ||| || || |||||| ||| ||| |||||| | Sbjct 14518 TGGTG--CTAGTATTAGGATGGATGATATCGAAGTGTCT-AGGGTTTCTAAATTGTGCCT 14574 Query 2329 TGCCTTCGAATTGGATGAGCACATGGAGGTGAGGTTGCCCATCTTCGTGTAGTTCT 2384 ||||||||||||| || || ||||| ||| || |||||| | |||| |||| Sbjct 14575 TGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCT 14630 Score = 87.8 bits (96), Expect = 3e-14 Identities = 227/342 (66%), Gaps = 23/342 (7%) Strand=Plus/Plus Query 928 ACTCATGCATCGAATCCTGTATATGCGACTCTTAAAATTCGGATCTATTTTTATGATGCG 987 ||||||||||| |||||||||||| ||| | | || || | ||||||||||| Sbjct 13117 ACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGT 13176 Query 988 ATAACAAATTAATAAAGTTTATATTTTATTGAATGATTTTCGAGTACA-----TGATTG- 1041 || |||||||||||| || |||||||| ||||| ||| |||||| || ||| Sbjct 13177 GTATCAAATTAATAAATATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGC 13236 Query 1042 ------ACATAGAATCTGTCTGTTGCGAATCTGACAGCTCTAATTACAAAATTAATTGAA 1095 |||| |||| | ||| ||| ||||||||||| | | ||||| | Sbjct 13237 TCAATTACATTGAAT-AATACATTG----TCT-ACAGCTCTAATAATATTGTTAATACTA 13290 Query 1096 ATGACACCTACTTGATCTAAGTACATATTTACTAAATATCGAAAT-CTATTTAAATAAGT 1154 || ||||||| | | ||||| | | |||| | || |||| || || | | || Sbjct 13291 ATAACACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACG 13350 Query 1155 CGTCCCAGAAGCTGTCAGATATCTGGTCCAGACCTGGAAGTTCAAGAAGCACCTGTGGAG 1214 | | || | || | | |||| || || |||||| | ||| |||| || Sbjct 13351 TATGTCGGAGGACGT----AAACGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAG 13406 Query 1215 ATCCAGTGCTTTCCTCAGGTTGTGGTTGAACCTGATTTGTAT 1256 || |||| | |||||||||||||||||||| | |||||||| Sbjct 13407 ATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8438561862884