Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_013102.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq19028 237 3e-59 >seq19028 Length=31091 Score = 237 bits (262), Expect = 3e-59 Identities = 273/366 (75%), Gaps = 1/366 (0%) Strand=Plus/Plus Query 1641 TTTTTCTCTTCGTCCAAGAATTCTTTATAGCTTGAATTGGGGCCGGGATTGCAGAGGAAG 1700 ||||| || || || | ||| ||||||||||| ||| | || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1701 ATAGTGGGAATTCCCCCTTTAATTTGAACGGGTTTTCCGTACTTTGTGTTGCTTTGCCAG 1760 || || || || || || || || | || || ||||||| ||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1761 TCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCAACGTCATCA 1820 | |||||||||||||| || |||||||| |||||||| || |||||||| |||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1821 ATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAAATCAAGATGACCACAC 1880 |||| ||| |||||||||| ||| || | || | ||||||| | |||||| || Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1881 AGATAATTGTGTGGACCCAATGATCGAGCCCACATCGTCTTCCCCGTCCGACTATCGCCC 1940 || ||||| ||||| || || |||| |||||| |||||||| || | | || ||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1941 TCTATGACTATACTTATTGGTCG-TAATGGCCGCGCAGCGGCACTGACAACGTTCTCTGC 1999 || ||||| ||||| | ||||| ||||||||||||||||||| ||| || || || Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2000 AGCCCA 2005 ||||| Sbjct 14188 TGCCCA 14193 Score = 203 bits (224), Expect = 6e-49 Identities = 316/439 (72%), Gaps = 17/439 (4%) Strand=Plus/Plus Query 957 TCACACAGAGAATGCTCTTTTGTTGTATATGGCATGTACTCATGCTAGTAATCCTGTGTA 1016 ||| || || ||||| ||||||||||| | |||||||| ||||||||| || Sbjct 13083 TCATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1017 TGCTACTTTGAAAATCAGAATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTGA 1075 | |||| ||| || | | ||||| ||||| ||| ||| |||||||||| ||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGA 13198 Query 1076 ATTTTATTATATTTGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAATACAT 1135 |||||||| || | | ||||| |||||| || | ||||| ||||||||| Sbjct 13199 ATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1136 GATC-ACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTC 1194 || ||| |||||||| | ||||||||||||||| ||||| || |||||| ||||| Sbjct 13259 TGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1195 A-TACATTGAACCCTAAATACTCTTAAGAAACGCCAGGTCTGAGGACGTAAATGAGTCCA 1253 | |||| ||| ||||||||||||||||| | ||| ||||||||||| |||||| Sbjct 13318 ATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1254 GATCTGGAAGATTAGAAAACATTGGTGTATTCCCAACGCTTTCCTCAGGTTGTAATTGAA 1313 ||||| |||| | || ||| || ||| | || | ||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1314 TTGGACTTGTATTGTGATGATGTCGTGGTTCATCAGAA----ATGGTCTCTCGTCGTGGC 1369 | | | ||||||| ||| ||||| |||| || ||| |||||| | |||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTC--GGTT-GTC-GAATTTGTTGGTCTGAGATTGTGGT 13492 Query 1370 TGATTATCTTGAAATATAG 1388 ||| |||||||||||||| Sbjct 13493 TGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681674335052