Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_013465.1 Length=2807 Score E Sequences producing significant alignments: (Bits) Value seq19028 183 5e-43 >seq19028 Length=31091 Score = 183 bits (202), Expect = 5e-43 Identities = 334/481 (69%), Gaps = 10/481 (2%) Strand=Plus/Plus Query 2136 ATCTAAATTTGAAACTAAATTATGATATTGAAAAATATATTTTTCAGGGAGTTTCTCCCT 2195 |||||| |||| ||||| ||||||||||||||| | | | ||| | || | ||| || || Sbjct 14264 ATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCT 14323 Query 2196 TATTATTTGTAACGCAGCTTCTTTAGAACCTGCGTTTAATGCCTCTGCGGCAGCGTCGTT 2255 || || | ||| |||| | || || |||| || ||||| | | || || Sbjct 14324 AATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATT 14383 Query 2256 AGCAGTCTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCAGTCGAG 2315 | || || ||||||||||||||||| || ||||| || || | ||||||||| Sbjct 14384 TGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGT 14443 Query 2316 GTAGTCTCCGTCCTTCTCGATGTATGACTTGACATCCGAGGAGGACTTAGCTGCCTGGAA 2375 ||| || | ||| ||| |||||||| ||| ||||| || || || ||||| | ||||| Sbjct 14444 GTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAA 14503 Query 2376 ATTTGGATGGAATTGGGAGGAGTTATGTGGAT-GATGTAGGTCGAAATGTCGTGGGTTTT 2434 ||||| ||| || || | ||| |||| |||| | ||||| |||| |||||| Sbjct 14504 GTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATG-ATATCGAAGTGTCTAGGGTTTC 14562 Query 2435 TGAACTCTGCTTTCCCCTTGAACTGGATGAGAACATGGAGATGCAATGACCCATCTTGGT 2494 | || | ||| || || | ||| || || || ||||| ||| ||| |||||| |||| Sbjct 14563 TAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGT 14622 Query 2495 GTTTCTCTTGGCTAACTCTGATAAACAGTTTATCCGACGGGCAATGGGTGGCCCTT--AA 2552 |||| ||||| | ||||| ||||||||||| || || ||| | | || || Sbjct 14623 GTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAA--GAAACCTGTTTCAA 14678 Query 2553 TTGCTCAAGCGCTTGCTCTTTAGATAAAGAACATTTGGGGTATGTTAAGAAA-ATATTTT 2611 ||||| | ||| ||||||| | || |||||| || ||| ||||||| || |||| Sbjct 14679 GTGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATG-TAAGAAATATGTTTT 14737 Query 2612 T 2612 | Sbjct 14738 T 14738 Score = 163 bits (180), Expect = 5e-37 Identities = 237/327 (72%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 1729 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAT 1788 || |||||||| | |||||| || || || ||||| || || | || ||| | |||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1789 TTACAGTTTGATTG-CCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1847 || | ||| | | ||| | | ||||||||||| || || |||||||||||||| || Sbjct 13930 TTT-ACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATA 13988 Query 1848 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAT-ACTTTTGGGC 1906 || || | ||||| |||||||| ||||||||| ||| | || || || | |||| Sbjct 13989 ATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATT--TGAATAAATTTTATTA 14046 Query 1907 TT-AGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCACACTGTT 1965 || | ||||||||| || || | ||||| || || || ||||| || |||||| |||| Sbjct 14047 TTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTC 14106 Query 1966 TTGCCTATTCTGCTTGGGCCTTCAATAACAATTGATATAGGTC-TATCCGGCCGCGCAGC 2024 || ||| |||| || ||||| ||||| | |||| | ||||||||||| Sbjct 14107 TTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGC 14166 Query 2025 GGAATCCATGACATTTTCAGCGGCCCA 2051 || |||| | ||||||||||| ||||| Sbjct 14167 GGCATCCCTAACATTTTCAGCTGCCCA 14193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8867113641540