Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_013639.1 Length=2808 Score E Sequences producing significant alignments: (Bits) Value seq19028 293 4e-76 >seq19028 Length=31091 Score = 293 bits (324), Expect = 4e-76 Identities = 524/761 (69%), Gaps = 18/761 (2%) Strand=Plus/Plus Query 1639 TGAGGGTGAAGAAGGTCGCATTCTTAATAGCCCAGGCTTTTAATGCCGCATTCTTTTCCT 1698 ||| |||| |||| ||||| | | || ||| ||||||| ||| ||||||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1699 CGTCCAGATATTCTATATATGATGATGTCGGTCCTGGATTGCAGAGGAAGATAGTGGGAA 1758 | || || | ||| |||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1759 TTCCACCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCGCTGGG 1818 | ||||| || || | | ||| | ||||| || ||||| ||| | | |||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1819 CCCCCATAAATTCCTTAAAGTGTTTTAGATAATGGGGATCGACGTCATCAATGACGTTAT 1878 |||||||||| || |||||||| ||||||||||| |||||||||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1879 ACCAAGCGTTATTAGAATAAACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTAT 1938 |||| || ||||| ||||||| || | | || ||||||||||| |||| |||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1939 GTGGCCCTAATGACCTAGCCCAAACTGTTTTGCCGGTACGACTATCGCCCTCAATAACTA 1998 |||| ||||| || || ||||| |||| || || || | | || |||||||| || | Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1999 TACTAATCGGTC-TTAAAGGCCGCGCAGCGGCACTCATGACGTTTTCCGAAACCCACTCT 2057 |||| | |||| |||| ||||||||||||||| | | || ||||| | |||| Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCAC 14197 Query 2058 TCAAGTTCTTCCGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCT 2117 |||| ||| || || |||||| | ||||||| ||||||||| | Sbjct 14198 TCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCA 14243 Query 2118 GGAGGCTCCTGAAAAATCCTATCTAAATTTGATTTTAAATTATGATATTGAAAAATAAAT 2177 ||||| | || || | |||||| |||| || ||||||||||||||| | ||| Sbjct 14244 GGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAAC 14303 Query 2178 TCTTTAGGGAGCTTCTCCTTAATAATAGCCATAGCGGCTTCAGCGGAACCTGCGTTTAAT 2237 | | || | || || ||||||||| | || ||||| || || |||| Sbjct 14304 TTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAAC 14363 Query 2238 GCTTCTGCGGCTGCGTCGTTAGCATTCTGGCAGCCTCCTCTAGCACTTCTGCCGTCGATT 2297 |||||||| | | | || || | | || | |||||||||||| || || |||||| Sbjct 14364 GCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATT 14423 Query 2298 TGGAATTCTCCCCATTCAAGTGT-GTCCCCGTCCTTGTCGATGTAGGACTTGACGTCGGA 2356 || || | ||||| || |||| || | ||| || ||||||| ||| || || || Sbjct 14424 TGAAAATTGCCCCAGTC-GGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGA 14482 Query 2357 GCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTG 2397 |||||||| || | |||||| ||| ||||| || Sbjct 14483 AGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG 14522 Score = 239 bits (264), Expect = 8e-60 Identities = 387/555 (70%), Gaps = 25/555 (5%) Strand=Plus/Plus Query 1003 CATACTGAGAATGCTTTGTTGTTGTATATGGCTTGTACTCATGCCTCTAACCCAGTGTAT 1062 |||||||| ||||| |||| ||||||| || |||||||| ||||| || || ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1063 GCTACTCTGAAAATACGCATCTATTTCTATGATGCAGTTACGAATTAATAAATATTAAAT 1122 |||| ||| || ||||| ||||| ||||| || | |||||||||||||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1123 TTTATTTCATGTTGTTCCAATACATAGCTTGTACTTTCAAGTACGTTGTACAATACATGA 1182 ||||||||||| | ||| | ||||| ||| |||| ||| ||| | ||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1183 TCAACTGCTCTAATAATTGCATTAATTGAAATTACACCCAAATTATCTAAATACTTTAAA 1242 || || ||||||||||| ||||| ||| ||||| || |||||| | || | Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1243 ACTTGAACCCTAAATACCCTTAAGAAACGACCAGTCTGAGGGCGTAAGCTCGTCCAGATC 1302 || ||| ||||||| ||||||||| ||| |||| ||||| | |||| |||| Sbjct 13321 ACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATC 13380 Query 1303 TTGAAGTTCAGAAAACACTTGTGAATCCCCAATGCCTTCCGCAGGTTGTGGTTGAACCTG 1362 |||||||| || ||| ||||||| || | |||||| ||||||||||||||| | Sbjct 13381 TTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGA 13440 Query 1363 ATTTGTACTGTTATTATGTCGTGTTG-GTAATTGAACGGTCTCTCGTCGTGGTTGGTTAT 1421 ||||||| | ||||||||| |||| |||| ||||| | ||||||| || Sbjct 13441 ATTTGTATTTCGATTATGTCG-GTTGTCGAATTTGTTGGTCTGAGATTGTGGTTGAGGAT 13499 Query 1422 CTTGAAATACAG-GGGATTTTGTATCTCCCAGATA------------AAA-------ACG 1461 ||||||||| || | | ||| ||||| ||| ||| ||| Sbjct 13500 CTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGACG 13559 Query 1462 CCATTCCAAGCTTGATGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTACTGCA 1521 |||||| ||||| || ||||||||| ||||||||||||| |||||||| | || Sbjct 13560 CCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGAACA 13619 Query 1522 GTTAATATGTATGAA 1536 | |||||| | |||| Sbjct 13620 GCTAATATTTTTGAA 13634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8870312455985