Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_014130.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq19028 134 2e-28 >seq19028 Length=31091 Score = 134 bits (148), Expect = 2e-28 Identities = 273/401 (68%), Gaps = 11/401 (3%) Strand=Plus/Plus Query 1459 TGTGAGGGTGATGAAGAGCGCATTCTTCAGGGTCCAATTCTTTAGACCTGTGTTTTCCTC 1518 ||||| |||| ||| ||||| | || | |||||| |||| | |||| || Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1519 TTTGTCTAGGAAGTCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGATGG 1578 | || ||||| ||||||||||||| | ||| |||||||| | | ||||| || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1579 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTATTTGCAATTTGACTG--CCAGTCCTTC 1636 ||||| || || || | || || | |||||||| | ||| ||| ||| | | Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTG-CTGGACCAATTGCTT 13953 Query 1637 TGGGCCCCCAGAAGTTCTTTCCAGTGCTTCAACTTTAGATAGTGCGGTGCGACGTCATCA 1696 |||||||||| || ||||| ||||||| |||||| ||||| |||||| |||| Sbjct 13954 TGGGCCCCCATAAACTCTTTAAAGTGCTT------TAGATAATGCGGATCGACGTTATCA 14007 Query 1697 ATGACGTTATACTCCACTTCATTTGAATATACCCGGGGATTGAAGTCCAGATGTCCACTG 1756 |||| ||||||| | | ||||||||| | ||| || || | ||| || | Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1757 AGATAATTATGTGGGCCTAACGCACGAGCCCACATTGTCTTACCTGTCCTTGAGTCACCT 1816 || ||||||||||| ||||| | | |||||| |||||| ||||| || || ||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1817 TCCACTATGATACTTACTGGTC-TATCTGGCCGCGCAGCGG 1856 || | | ||||| |||| | |||||||||||||| Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 82.4 bits (90), Expect = 1e-12 Identities = 253/388 (65%), Gaps = 40/388 (10%) Strand=Plus/Plus Query 839 GAATCATACAGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCATCTAACCCCGT 898 || |||||| || || || |||| |||||| | |||||||||||||| || || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 899 GTATGCAACGCTTAAGATCCGAATCTATTTCTACGATTCGATCACAAATTAATAAATTTT 958 ||| || | | | || | ||||| || || | ||||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 959 GAATTTTATTACATGATTTTCTGGAACATA------------AGTTACATACGATCTGTC 1006 |||||||||| |||||| ||| | |||| | |||||| || | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1007 --TGTCGCGAATCGTACAGCTCTGATTACATTGTTAATTGAAATCACGCCTAACCTATCT 1064 |||| ||||||||| || | ||||||||| ||| || ||||| | ||| Sbjct 13257 ATTGTC--------TACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCT 13308 Query 1065 AAATACAAATTAACTAAGCGC---TTAAAT-CTAGCTAAATAAGTCGACC--CAGAAGCT 1118 ||| || || | || || |||||| || || || || || | || | Sbjct 13309 AAA---AATTTCATTACACGAAATTTAAATACT--CTTAAGAAAACGTATGTCGGAGGAC 13363 Query 1119 GTCATCGATATCGTCCAGACTTGGAAGTTCAGGAAGGCTTTGTGGAGATGCAACGCTTTC 1178 || | ||| |||| || | |||||| ||||| |||||||| |||| || | ||| Sbjct 13364 GTAAACGA----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTC 13419 Query 1179 CTCAGGTTGTGGTTGAATCGTATTTGTA 1206 |||||||||||||||||||| ||||||| Sbjct 13420 CTCAGGTTGTGGTTGAATCGAATTTGTA 13447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8243432115486