Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_014473.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq19028 475 6e-131 >seq19028 Length=31091 Score = 475 bits (526), Expect = 6e-131 Identities = 708/996 (71%), Gaps = 25/996 (3%) Strand=Plus/Plus Query 1604 GAGGGTGATGAATGTCGCATTCTTTAAAGCCCAATTTTTGAGTGCAGCATTCTTCTCTTC 1663 || |||| |||| ||||| | |||| ||||||||| | | | ||| || || || Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1664 ATCCAAGAACTCTTTATAACTGGAATTCGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1723 || | |||||||||||| |||||| | || || |||||||| | |||||| || || || Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1724 TCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTG-CCAGTCCCTTTGGG 1782 || || || || | || ||| ||||||| ||| || | | | ||| | ||||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGG 13957 Query 1783 CCCCCATGAATTCCTTAAAGTGCTTTAGGTAATGGGGATCTACGTCATCAATGACGTTAT 1842 ||||||| || || |||||||||||||| ||||| ||||| |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1843 ACCAGGCATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTAT 1902 ||||||||| ||| || | || | | |||| ||| || || | ||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1903 GTGGTCCGAGTGATCTGGCCCACATCGTCTTGCCCGTTCTACTATCACCCTCTATCACTA 1962 ||||||| | ||||| |||||| ||||| || |||||| |||||||| || || | Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1963 TACTTATGGGCC-TCAAAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCACTCC 2021 |||| |||| | | || ||||||||||||||| ||| || || || ||||| | Sbjct 14138 TACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCAC 14197 Query 2022 TCAAGTTCTTGTGGAACTTGATCAAAAGAAGAAGAGGAAAAAGGAGAAACATAAGCCTCC 2081 |||| |||| ||| |||||| | ||||||| |||||||| || Sbjct 14198 TCAA----TTGTTGAAG----------GAAGAACAACTAAAAGGACTAACATAAGGTTCA 14243 Query 2082 ACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAA 2141 ||| || | || || | |||||| || || |||||||||||| ||||| || Sbjct 14244 GGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAA 14301 Query 2142 TCTTTG--GGGAGTTTTTCCCTAATTATTGTTAAAGCAGCTTCAGCCGAACCTGCATTTA 2199 ||||| || | |||||| ||||| || | | || ||||| || ||| ||| Sbjct 14302 ACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTA 14361 Query 2200 GGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCTTCCATCGA 2259 || ||||| | ||||||| | ||| ||| ||||||||||||||||| |||||||| Sbjct 14362 ACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGA 14421 Query 2260 TCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAG 2319 | ||||| | ||||||||| ||||||||| ||| ||| ||||||| ||| ||||| | Sbjct 14422 TTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTG 14481 Query 2320 AGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTGGGAGGAGTTATTAGGGTGAGTGA 2379 | || || || ||||||||||||||| || || | ||||||| || ||| Sbjct 14482 AAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGA 14541 Query 2380 CATCGAAATGTCTGGGGTTTCTGAACTGGGATTTACCTTTGAATTGGATGAGTGCGTGGA 2439 |||||| ||||| |||||||| || || | || |||| |||||| || || || ||| Sbjct 14542 TATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGC 14601 Query 2440 TATGCAGGCTCCCATCTTGGTGTTTTTCTTGTGATACTCTGATAAATAATTTATCAGAAG 2499 |||| | |||||| |||||||||||||| | ||||| ||| | ||||| |||| Sbjct 14602 TATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAG 14659 Query 2500 GACAAGAAATGT-TTTTAAGTAGTTCGAGCATTTGCTCTTTGGGTATTGGGCATTTAGGA 2558 ||||||||| | ||| |||| | || | ||||| ||||| || | || ||||| ||| Sbjct 14660 GACAAGAAACCTGTTTCAAGT-GCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGA 14718 Query 2559 TAAGTGAGGAAGATATTTTTTGCCTTAATTTGGAAT 2594 | || || || || ||||| | || | |||||| Sbjct 14719 AATGTAAGAAATATGTTTTTAGAATTTACCTGGAAT 14754 Score = 132 bits (146), Expect = 8e-28 Identities = 258/384 (67%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 966 GAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCATCTAACCCAGT 1025 || |||| |||| ||||| || ||||||||| | |||||||||||||| || || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1026 GTATGCTACTCTGAAAATACGGATCTATTTTTATGATTCCGTAACAAATTAATAAATATT 1085 ||| |||| ||| || ||| | ||||||||||| ||| |||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1086 AAATTTTATTGAATAAGATTGTTCTATATATACAATGTGTTGTAATACATTCCATAATAC 1145 ||||||||| || | ||| || || || | || | | |||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1146 ATGATCAACTGATCTGATTACATTATTAATACTGATAACTCCTAAATTATTTAANNNNNN 1205 || || || | ||| || | ||| |||||||| ||||| ||||| | ||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1206 NNNNNCTTGAGTCTTAAATACCCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCA 1265 | || |||||||| ||||||||| ||| |||| || || ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1266 GATTCGGAAGACTAGAAAACACTTGTGCATCCCCAATGCTCTCCTCAGGTTGTGATTGAA 1325 ||| |||| || ||| ||||| | || | | ||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1326 CTGTATTCGGATTGTCATTATGTC 1349 | ||| | ||| |||||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTC 13460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668878941780