Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_014596.1 Length=2707 Score E Sequences producing significant alignments: (Bits) Value seq19028 228 1e-56 >seq19028 Length=31091 Score = 228 bits (252), Expect = 1e-56 Identities = 507/744 (68%), Gaps = 54/744 (7%) Strand=Plus/Plus Query 1560 GTGAGGGTGATGAATTCTGCATTCTTGAGTGCCCAGTCTTTGAGTGCTGAATTCTTTTCC 1619 |||| |||| |||||||||||| | | | ||| | ||| | | ||| |||||| Sbjct 13777 GTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCC 13836 Query 1620 TCGTC------CTCTCTTATAGATG-ATTTCGGGCCTGGATT---CAGAGAGATAGTGGG 1669 || || |||| |||||| || | | || || ||||| || |||| || || Sbjct 13837 TCCTCGAGGAACTCT-TTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1670 -ATTCCAC--TTTAT--TTGCAGGGCTTCCCGTACTTTGTGTTCTTTG-CCAGTCCCTTT 1723 || |||| ||||| || |||| ||||| ||| ||| || | | ||| | |||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCC-GTATTTTACCTTGCTGGACCAATTGCTTT 13954 Query 1724 GGGCCCCCATGAA-TCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGT 1782 |||||||||| || |||||||||||||||||||| || |||||||||| |||||||| || Sbjct 13955 GGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGT 14014 Query 1783 TGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGT 1842 | |||||||||| ||| || | || | ||| || | ||||| |||| || | Sbjct 14015 TATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAAT 14074 Query 1843 TATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGA 1902 ||||||| || | ||| || |||||| ||||||||||||||| ||||||||| |||| Sbjct 14075 TATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGA 14134 Query 1903 CTATACTGACGGGTC-TCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGAAACCCAG 1961 | ||||| ||||| | | |||||||||||||||||||| |||||||| | ||||| Sbjct 14135 CAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAG 14194 Query 1962 CATTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGATAAAAAAGGAGAAACAAAAACC 2021 || |||| ||| | ||| |||||| | ||||||| |||| || Sbjct 14195 CACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGT 14240 Query 2022 TCTAAAGGA-GGTGCA--AAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAT 2078 || |||| || ||| || || | |||||| || | | || ||||||| |||| ||| Sbjct 14241 TC---AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAAT 14297 Query 2079 ACATAATCCTTAGGTG---CTAATTCCTTAATTACGCTAAGAGCCTCCGACTTACTTCCT 2135 | | | ||| | || | ||| |||| | ||| || || | | || | Sbjct 14298 AGAAA---CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTC---TTCAATTGAT 14351 Query 2136 GT----GTTAATCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTGCAGA 2191 || |||| ||| | || | ||||||| | || ||| || ||||| ||||| Sbjct 14352 GTAGCACTTAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGA 14410 Query 2192 TCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCATATAGGA 2251 || ||||||||| ||||| | ||||| ||| | || | ||| || | || || Sbjct 14411 TCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTT 14470 Query 2252 CTTGACATCGGAACTCGATTTAGC 2275 ||| ||||| ||| |||||||| Sbjct 14471 CTTAACATCTGAAGATGATTTAGC 14494 Score = 141 bits (156), Expect = 2e-30 Identities = 272/389 (70%), Gaps = 14/389 (4%) Strand=Plus/Plus Query 930 TCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTA 989 ||||||||| ||||| | |||||||| || |||||||| ||| || || || Sbjct 13083 TCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 990 TGCAACATTGAAGATCA-GAATCTACTTCTATGATTCTGT-TCAGAATTATAAATATTGA 1047 | || ||| || || | | || || ||||| ||| ||| | | ||||||||||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGA 13198 Query 1048 ATTTTATTATATGTGATATGAG--CATCA--TGTGCCCTCCAT-ACATCATACAGTACAT 1102 |||||||| ||| || || |||| ||| ||| || |||| | | ||||| Sbjct 13199 ATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1103 GGGATATAGCCCTAATTACATTGTTAATACTAATAACGCCTAAACTATCTAAGTACTTCA 1162 | || ||| ||||| | |||||||||||||||||| ||||| | ||||| | |||| Sbjct 13259 TGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCA 13318 Query 1163 -TACATTGATATTTAAATACTCTTAAGAAACGCAAGGTCTGAGGACGTAAACGAGTCCAG 1221 |||| || |||||||||||||||||||| | ||| |||||||||||||||||| | Sbjct 13319 TTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTG 13377 Query 1222 ATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAAC 1281 || | | | || ||| | ||| | || | ||||||||||||| |||||| Sbjct 13378 ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Query 1282 TGGACTTGTAAGGTTATTATGTC-GTTGT 1309 | | ||||| |||||||| ||||| Sbjct 13438 CGAATTTGTATTTCGATTATGTCGGTTGT 13466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8550521554014