Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_014707.1
Length=2736
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 297 3e-77
>seq19028
Length=31091
Score = 297 bits (328), Expect = 3e-77
Identities = 518/748 (69%), Gaps = 33/748 (4%)
Strand=Plus/Plus
Query 1571 TGGCTCTGTGAGGGTGATGAATGTTGCATTATGTATAGCCCACGACCTCAGTGCTGAGTT 1630
||| | ||||| |||| |||| ||||||||| | || ||| | | | ||
Sbjct 13770 TGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATT 13829
Query 1631 CTTTTCCTCATCGAGGTATTCTCTATAGCAGGAATTGGGCCCAGAATTGCAGAGGAAGAT 1690
|||||||| |||||| | ||| |||||| |||| | || |||| |||||| | ||||||
Sbjct 13830 TTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGAT 13889
Query 1691 AGTGGGAATACCTCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTACTTTGCCAGTC 1750
|| || || || || || || | || || | ||||| || || || ||| |
Sbjct 13890 TGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATT 13949
Query 1751 CCTCTGGACCCCCATGAACTCTTTAAAATGCTTTAGGTAGTGGGGGTCTACGTCATCAAT 1810
|| ||| ||||||| ||||||||||| |||||||| || || || || |||| ||||||
Sbjct 13950 GCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAAT 14009
Query 1811 GATGTTATACCATGCATCATTTGAATATATCTTGCGACTCAGATCTAAATGTCCACACAG 1870
|||||||||||| |||| ||||||||| || || | ||| ||||||||| || || ||
Sbjct 14010 GATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAG 14069
Query 1871 GTAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCCGTACGACTATCACCCTC 1930
|||||| |||||||| ||||| || |||||| |||||| || || | | ||||||||
Sbjct 14070 GTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129
Query 1931 AATGACGATACTTTTAGGTC-TCAATGGCCGCGCAGCGGGACCCATCACATTTTCAGAGG 1989
|||||| ||||| || |||| | |||||||||||||||| | || | |||||||||| |
Sbjct 14130 AATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTG 14189
Query 1990 CCCATTCCTCTATGGCCTCTGGAACTTGATCGAAGGAAGATGAAAGAAAAGGGGAAACAT 2049
|||| ||| || | | ||||||||| || |||||| |||||
Sbjct 14190 CCCAGCACTCAATTG--------------TTGAAGGAAGAACAACTAAAAGGACTAACAT 14235
Query 2050 AAACCTCCATTGGA-GGTGCA--AAAATCCTATCTAAATTAGCATTAAGATTATGAAATT 2106
|| || ||| || ||| || || | |||||| || | | | ||||||| |||
Sbjct 14236 AAGGTTC---AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATT 14292
Query 2107 GTAAGACATAATCCTTTG-GGGC--TAATTCCCTAATGACTCTAAGAGCCTCTGACTTAC 2163
| || | | | ||||| ||| | ||| ||||| | ||| || ||| | |
Sbjct 14293 GAAATAGAAA---CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCT---TCAA 14346
Query 2164 TGCCTGTATTAATT---GCTTTGGCGTAAGCATCATTGGCTGACTGTTGTCCCCCTCTTG 2220
| |||| | || |||| || | ||||||| | || ||| || ||||| |
Sbjct 14347 TTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAG 14406
Query 2221 CAGATCGTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCATCCTTCTCCATAT 2280
|||||||||||||||| ||||| | ||||||||| | || | || ||| | || |
Sbjct 14407 CAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGT 14466
Query 2281 AGGACTTGACATCTGAGCTTGACTTAGC 2308
| ||| |||||||| ||| |||||
Sbjct 14467 ATTTCTTAACATCTGAAGATGATTTAGC 14494
Score = 172 bits (190), Expect = 9e-40
Identities = 262/370 (71%), Gaps = 5/370 (1%)
Strand=Plus/Plus
Query 939 GAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCCGT 998
|| ||||||||| ||||||||| |||||||| | || || || ||||| || ||
Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136
Query 999 GTATGCCACTTTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAATATT 1058
||| ||| ||| | ||| | || || ||||| ||||| ||||||||||||||
Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196
Query 1059 GAATTTTATATCATGATCCTCAATTACATTAATTGTGCCCTCAAGTACATCATATAATAC 1118
||||||||| ||||||| |||| ||||| | ||| ||||| ||||| |||||||
Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256
Query 1119 A-TGTCTGAAAGCCTTAATACAATTATTTATACTAATTACGCCTAAACTATCTAAATATC 1177
| ||||| | ||| ||||| ||| || |||||||| || ||||| | |||||| ||
Sbjct 13257 ATTGTCT-ACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315
Query 1178 TTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCAAGTCTGAAGATGTAAACGAGTGT 1237
| | || || ||||| |||||||||||| | ||| || || ||||||||||
Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375
Query 1238 GGATCCTCAAGCCCAAGAAACAATTCATTATCCCCAGTCTCTTCCTGAGGTTGTGATTGA 1297
|||| | ||| | |||| || | |||| |||||| |||||||| ||||
Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435
Query 1298 ATTGTATCTG 1307
|| | || ||
Sbjct 13436 ATCGAATTTG 13445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8643288155236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |