Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_015324.1 Length=2824 Score E Sequences producing significant alignments: (Bits) Value seq19028 217 3e-53 >seq19028 Length=31091 Score = 217 bits (240), Expect = 3e-53 Identities = 340/483 (70%), Gaps = 4/483 (1%) Strand=Plus/Plus Query 2161 ATTCTATCTAAATTACTACGTAAATTATGATATTGAAAAATAAAATCTATAGGAAGTTTC 2220 |||| |||||| || | || ||||||||||||||| | ||| | | || | ||| Sbjct 14259 ATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTT 14318 Query 2221 TCCCTAATTATTTGTAATGCTGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCA 2280 || ||||| || | ||| ||||| || || |||| || ||||| | | || Sbjct 14319 TCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACA 14378 Query 2281 TCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAG 2340 ||||| | ||| || ||||||||||||||||| ||| |||| ||||||| | |||||| Sbjct 14379 TCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAG 14438 Query 2341 TCGATGTAATCACCGTCCTTCTCGATGTAGGATTTGACATCGGATGATGATTTAGCTCCC 2400 ||| ||||||||| ||| ||| ||||||| || ||||| || ||||||||||| Sbjct 14439 TCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGAT 14498 Query 2401 TGGAAATTTGGATGGAATTGGGTGGAGCTGTTGGGGTGTTGCAGGTCGAAATGTCTGGGA 2460 ||||| ||||| ||| || |||| | || || || | ||||| ||||| || Sbjct 14499 TGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGG 14558 Query 2461 TTTTTAAACTGGGCTTTACCCTTGAATTGGATGAGAGCATGGAGGTGCAAAGACCCATCT 2520 ||| |||| || || || || | |||||| || || |||||| || || |||||| Sbjct 14559 TTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCC 14618 Query 2521 TGGTGTTTTTCCTGGCTAACTCTGATAAACAATTTATCAGATGGGCAGTTTACTGCCTTT 2580 ||||||||||| || | ||||| ||||| ||||| || || || || || Sbjct 14619 TGGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTC 14676 Query 2581 AATAGCTC-AAGAGCTGTTTCTTTAGAGAGAGAACATTTGGGATAAGTAAGAAAGACATT 2639 || |||| |||| || ||||||| |||| |||||| ||| | |||||||| | || Sbjct 14677 AAGTGCTCTAAGATTTG-ATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTT 14735 Query 2640 TTT 2642 ||| Sbjct 14736 TTT 14738 Score = 165 bits (182), Expect = 1e-37 Identities = 237/328 (72%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 1759 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1818 || |||||||| | |||||| || || || || || || || | || ||| |||||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1819 TT-ACAGT--TGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAGG 1875 || || | |||| | | | ||| ||||||||||| || || || ||||||||||| Sbjct 13930 TTTACCTTGCTGGAC--CAATTGCTT-TGGGCCCCCATAAACTCTTTAAAGTGCTTTAGA 13986 Query 1876 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTACTATATACTTTTGGG 1935 || || || | ||||| |||||||| ||||||||| ||| | || ||| | ||| Sbjct 13987 TAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTA 14046 Query 1936 CTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTT 1995 | | ||||||||| || || | ||||| || || || ||||| || ||||| |||| Sbjct 14047 TTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTC 14106 Query 1996 TTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGGTC-TATCCGGCCGCGCAGC 2054 || ||| |||| || ||||| ||||| |||||| | ||||||||||| Sbjct 14107 TTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGC 14166 Query 2055 GGCATCCATGACATTTTCAGCGGCCCAG 2082 ||||||| | ||||||||||| |||||| Sbjct 14167 GGCATCCCTAACATTTTCAGCTGCCCAG 14194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8921493487105