Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_015488.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq19028 188 1e-44 >seq19028 Length=31091 Score = 188 bits (208), Expect = 1e-44 Identities = 459/685 (67%), Gaps = 23/685 (3%) Strand=Plus/Plus Query 1519 TTTTTCTCTTCTCCGAGATACTCCTTATATGATGAATGGGGACCAGGATTGCAGAGGAAG 1578 ||||| || || |||| |||| ||||| ||| |||||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1579 ATAGTGGGAATTCCTCCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATTG-CCA 1637 || || || || || || || || | | ||| |||||||||| | ||| | | ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTGCTGGACCA 13946 Query 1638 GTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTCAGATAATGCGGATCAACGTCATC 1697 | |||||||||||||| ||||||||||||||||| |||||||||||||| |||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1698 GATGACGTTATACCACGCATCGTTGGAGTATATCCTTGGGTTGAGATCGATATGACCACA 1757 |||| ||||||||| |||| || || || || | || | ||| | |||||| || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1758 TAAATAATTGTGAGGGCCCAGACTTCGGGCCCATATTGTTTTGCCCGTTCTTGATGGACC 1817 || ||||| || || || | | || ||||| ||| || || ||||| || ||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1818 TTCAACAATGATTGATATCGGTC-TCAATGGCCGCGCAGCGGAATCGGAAATATTTTCGT 1876 |||| | || | |||| | |||||||||||||||| ||| || |||||| Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 1877 TAACCCAATCGGACATGATTTCTGGGACATTGTTGAACGTGGATAATTGAAACGGAGAAA 1936 |||| | || || ||||||||| | || | ||| ||| || Sbjct 14187 CTGCCCA---GCAC------TC-----AATTGTTGAAGGAAGAACAACTAAAAGGACTAA 14232 Query 1937 CCCATGGTTCTGG-TGGTTTATGAAATATT--TTCGTTATGTTGGACACCAGATTGTGAT 1993 | | ||||| || || ||| |||||| || | || ||||| || | ||| |||| Sbjct 14233 CATAAGGTTCAGGAGGGGGCATG-AATATTCGATC-TAATTTTGGA-ACTATATTATGAT 14289 Query 1994 ATTGAAGGACGAAATGTTTAGGTTGTTGCTCTTTAATAATCTGCATAGCCTCTTCTGCAG 2053 |||||| | || | | || || ||| ||||||| | || ||||| | Sbjct 14290 ATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTG 14349 Query 2054 ATTCTGCATTTAACGCCCTTGCATATGAATCGTTAGCAGATTGCTGACCTCCTCTAGCAG 2113 || ||| ||||||| |||| || ||| || | | || |||||||||||||| Sbjct 14350 ATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAG 14409 Query 2114 ATCTGCCGTCGATCTGAAATTCTCCCCATTCAATTGTATCGCCGTCCTTGTCGATGTAGG 2173 ||| || ||||| ||||| | ||||| || | ||| | ||| || ||||||| Sbjct 14410 ATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATT 14469 Query 2174 ACTTGACGTCGGAGCTTGACTTAGC 2198 ||| || || || ||| ||||| Sbjct 14470 TCTTAACATCTGAAGATGATTTAGC 14494 Score = 141 bits (156), Expect = 2e-30 Identities = 263/379 (69%), Gaps = 18/379 (5%) Strand=Plus/Plus Query 842 CATACTGAGAACGCTCTATTGTTGTATATGGCTTGTACTCATGCCTCGAACCCTGTGTAT 901 |||||||| || || |||||||||||| || |||||||| || || ||||| ||| Sbjct 13084 CATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 902 GCTACTTTGAAAATTCGGATCTATTTTTACGATTCGATAATGAATTAATAAAATTTGTAT 961 |||| ||| || || | |||||||| || || |||||||||| ||| || Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 962 TTTATTTCATGATCTTCAACTACAT----TATTTAC---ATAACGTCTGTCCGTTGCATA 1014 ||||||||||||| ||||| ||||| | ||| | || || | || | ||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATACATT 13259 Query 1015 TGAGACAGCTCTGATTATATTGTTAACTGAAATAACACCTAAATTGTCTAAGTAATACAT 1074 |||||||| || |||||||||| |||||||||||| |||||| | | ||| Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1075 GACAAGGTACTTAAATCTACTTAAATAAA--TCTGCCCAGAAGCTGTCGTCAATGTCGTC 1132 ||| | | |||||| ||||| ||| | || | | || | ||| || | ||| Sbjct 13320 TACACGAAATTTAAATACTCTTAAGAAAACGTATGTC--GGAG--GACGTAAACG-AGTC 13374 Query 1133 CAGACTTGGAAATTGAAGTAGGCTTTGTGAAGTGCCAACGCTTTCCTCAGGTTGTGGTTG 1192 | || | ||| |||| | | ||||||||||| || | |||||||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1193 GCTCGGATTTGTATGTCGA 1211 ||| |||||||| |||| Sbjct 13435 AATCGAATTTGTATTTCGA 13453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8243432115486