Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_015490.1 Length=2640 Score E Sequences producing significant alignments: (Bits) Value seq19028 194 3e-46 >seq19028 Length=31091 Score = 194 bits (214), Expect = 3e-46 Identities = 446/658 (68%), Gaps = 23/658 (3%) Strand=Plus/Plus Query 1525 tttttttCCTCTCCGAGATACTCCTTATATGATGAATGGGGGCCAGGATTGCAGAGGAAG 1584 ||||||||||| |||| |||| ||||| ||| || ||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1585 ATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTTCCGTATTTGCAGTTTGATGG-CCA 1643 || || || || ||||| || || | | ||| |||||||||| | ||| ||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTT-TACCTTGCTGGACCA 13946 Query 1644 ATCCCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTGAGATAATGCGGATCTACGTCATC 1703 || || ||||||||||| || |||||||||||||| |||||||||||||| |||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1704 GATGACGTTATACCATGCATCATTGGAGTATATCCTCGGGTTGAGATCTATATGTCCACA 1763 |||| ||||||||| |||| ||| || || || | || | ||||| ||| || || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1764 TAGATAATTGTGAGGGCCCAGGCTACGGGCCCATATTGTTTTGCCCGTTCTTGATGGTCC 1823 ||| ||||| || || || | | ||||| ||| || || ||||| || || Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1824 TTCAACAATGATTGATATAGGTC-TCAACGGCCGCGCAGCGGCATCGGAAATATTATCGT 1882 |||| | || | |||| | || ||||||||||||||||| || ||| || Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 1883 CGACCCACTTCATCATTATTTCCGGTACATTAATGAACGTGGACATTTGAAATGGAGGAA 1942 | |||| | ||| ||| || | || ||| | ||| | ||| ||| || Sbjct 14187 CTGCCCAGCAC-TCA--ATT----GT---TGAAGGAA---GAACAACT-AAAAGGACTAA 14232 Query 1943 CCCATGGTTCCGGAGGTTTATGGAATATTTTCGTTATA--TTTGAAACCAGATTGTGATA 2000 | | ||||| ||||| ||||| |||| | || |||| ||| | ||| ||||| Sbjct 14233 CATAAGGTTCAGGAGGGGGCATGAATA--TTCGATCTAATTTTGGAACTATATTATGATA 14290 Query 2001 TTGGAGGACGAAATGTTG-TGGTTGTTGTTCCTTAATGATCTGCATCGCCTCTTCTGCAG 2059 ||| | | |||| ||| ||| || ||| |||| || | ||| ||||| | Sbjct 14291 TTGAAATA-GAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTG 14349 Query 2060 AAGATGAATTCAACGCCGTCGCATATGTGTCGTTAGCAGATTGCTGACCTCCTCTAGCAG 2119 | | | | | ||||| ||| || || || | | || |||||||||||||| Sbjct 14350 ATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAG 14409 Query 2120 ATCTGCCGTCGATTTGAAATTGTCCCCATTCGATTGTATCTCCGTCTTTGTCGATGTA 2177 ||| || ||||||||||| | ||||| ||| | ||| | |||||| ||||||| Sbjct 14410 ATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTA 14467 Score = 150 bits (166), Expect = 3e-33 Identities = 265/377 (70%), Gaps = 22/377 (6%) Strand=Plus/Plus Query 847 TCATACGGAGAATGCTCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTA 906 |||||| || ||||| ||| ||||| || | |||||||| ||||| ||||| || Sbjct 13083 TCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 907 TGCTACTTTGAAAATTCGGATCTATTTTTATGATTCGATAATGAATTAATAAAATTTGAA 966 | |||| ||| || || | ||||||||||| || |||||||||| ||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 967 TTTTATTTCATGTTGTTCAAGTACATCATTTACATATTG-TC-TGTCCGTTGCATA---- 1020 |||||||||||| | |||||||||||| || ||| || | | ||| ||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATC---CACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1021 --TG-AGACAGCTCTAATTACATTATTAACTGAAATAACCCCTAAATTGTCTAAGAATTT 1077 || ||||||||||| | ||| |||| |||||| ||||| |||||| ||||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1078 CATAACAAGAAATTTGAATCTACTTAAATAAA--TCTGCCCAGAAGCTGTCGTCAAAGTC 1135 ||| ||| ||||||| ||| ||||| ||| | || | | || | ||| ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTC--GGAG--GACGT-AAACGA 13371 Query 1136 GTCCAGACTTGGAAATTGAAGTAGGCTTTGTGGAGATCCAACGCTTTCCTGAGGTTGTGG 1195 |||| || | ||| |||| | | |||||||| |||| || | ||||| ||||||||| Sbjct 13372 GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGG 13431 Query 1196 TTGGCGCGAATTTGTAT 1212 ||| ||||||||||| Sbjct 13432 TTGAATCGAATTTGTAT 13448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8336198716708