Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_015627.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq19028 143 4e-31 >seq19028 Length=31091 Score = 143 bits (158), Expect = 4e-31 Identities = 426/650 (66%), Gaps = 28/650 (4%) Strand=Plus/Plus Query 1522 CCTGGATTGCACAGCACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTAC 1581 || |||||||||| | ||||| ||||| ||||| || || | || ||| | ||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1582 TTACAGTTTGATTG-CCAGTCCCTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAGCTT 1640 || | ||| | | ||| | ||||||||||| || | ||||| |||||||||| Sbjct 13930 TTT-ACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG--- 13985 Query 1641 TAAATAATGCGGAGCAATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGACCTT 1700 |||||||||| | | || |||||||| ||||||| ||| ||| || | | || Sbjct 13986 ---ATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTT 14042 Query 1701 GGAATTGAAGTCGAGGTGACCACTCAAATAATTATGTGGGCCTAAAGCACGCGCCCACAT 1760 ||| || || | ||||| | | ||||||||||| ||||||| | |||||| Sbjct 14043 ATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTC 14102 Query 1761 GGTTTTGCCTGTTCGAGAATCACCTTCAATTATGATACTAATAGGTC-TCTCCGGCCGCG 1819 || || ||||||| ||| ||||| ||||| | ||||| | |||| | ||||||| Sbjct 14103 TGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCG 14162 Query 1820 CAGCGGAACTCCGACCAAAATACTCATCGGCCCATGAACTCATCTCGTCTGGAACGTTAG 1879 |||||| | ||| | || || ||| | ||||| | ||||| || Sbjct 14163 CAGCGGCA-TCC--CTAACATTTTCAGCTGCCCA-GCACTCA-------------ATTGT 14205 Query 1880 TAAAGGAGGAGAGTTGAAACGGAGGAACCCATGGTTCCGGAGCCTTCTGAAAAATCCGAT 1939 | ||||| || ||| ||| ||| | ||||| |||| | || || |||| Sbjct 14206 TGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGAT 14265 Query 1940 GAGCATTGGCAACCAAATTATGATGTTGAAGGAAAAAATGTTGAGGCTGCTCTTCTTTGA 1999 || | ||| | |||||||| ||||| | ||| | | ||| | |||| | | Sbjct 14266 CTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAA 14325 Query 2000 TTATCATCAGTGCCTCTTCTGCAGAAGAGGCATTTAACGCCTTGGCATATGTATCGTTAG 2059 | || || || ||||| || | ||| ||||||| | ||| || ||| || | Sbjct 14326 TAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTG 14385 Query 2060 TAGATTGGCAGCCTCCTCTAGCACTTCTGCCGTCGATCTGGAAATCTCCCCATTGCAGTG 2119 | | || | |||||||||||| || || ||||| || |||| ||||| | | ||| Sbjct 14386 TTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGT-CGGTG 14444 Query 2120 T-ATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTAGATTTAGC 2168 | ||| | ||| || ||||||| ||| || || || |||||||| Sbjct 14445 TAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGC 14494 Score = 118 bits (130), Expect = 2e-23 Identities = 251/369 (68%), Gaps = 18/369 (5%) Strand=Plus/Plus Query 808 GAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGT 867 || |||||| || || || ||||| |||||| | |||||||| |||||||| || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 868 GTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATATTAAATTAATAAATTTT 927 ||| || ||| || || | ||||||||||| ||| |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 928 GAATTTTATTTCATGATTCTCAAGTACAT---CAGTTACATACGAT----TTGTCTGTTG 980 ||||||||||||||||| |||||||||| | ||| | | || ||| | | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCT-CAATTACATTGAATAATA 13255 Query 981 CGAAACGAACAGCTCTAATTACATTGTTTATACCAATAACGCCTAAACTATCTAAATAAG 1040 | ||||||||||| | |||||| |||| |||||| ||||| | |||||| | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1041 ACATTACAAGTAATTTGAATCTACTTA--AATATCTCTGCCCAGAAGCTGTCATCGAAGT 1098 ||||||| | ||||| ||| |||| || | | || | || | || | ||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATG-TCGGAGGACGTAAACGA--- 13371 Query 1099 CGTCCAAACTTGGAAATTGAAGAAGGCTTTGTGGAGACCCAACGCTTTCCGAAGGTTGTA 1158 |||| | | ||| |||| ||| |||||||| ||| || | |||| ||||||| Sbjct 13372 -GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTG 13430 Query 1159 ATTGAACCG 1167 ||||| || Sbjct 13431 GTTGAATCG 13439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8211443632306