Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_016580.1 Length=2540 Score E Sequences producing significant alignments: (Bits) Value seq19028 241 2e-60 >seq19028 Length=31091 Score = 241 bits (266), Expect = 2e-60 Identities = 554/821 (67%), Gaps = 40/821 (5%) Strand=Plus/Plus Query 1447 ATTTTCTTGTTTGTCTAGGAAGTCTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCAC 1506 ||||| || | || ||||| |||||||| || | || |||||||||| | Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1507 GATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTTCCGTATTTACAGTTGGACTG--C 1564 ||||| || ||||| || || || | |||||| |||||||||| ||| ||| | Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTG--CTGGAC 13944 Query 1565 CAGTCCCTTTGGGCCCCAATCAACTCTTTCCAATGTTTCATCTTTAGATAATGCGGACTG 1624 || | ||||||||||| || |||||||| | || |||||||||||||||| | Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTG------CTTTAGATAATGCGGATCG 13998 Query 1625 ACATCATCAATGACGTTATATTGAACAGTATTTGAATATACTTTAGAATTAAAATCAAGA 1684 || | |||||||| |||||| || |||||||||| | |||| ||| ||||| | | Sbjct 13999 ACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAA 14058 Query 1685 TGTCCGCTCAAATAATTATGTGGGCCTAGTGCACGAGCCCACATCGTCTTCCCTGTTCGA 1744 || |||| | ||||||||||| |||| | | |||||| ||||||||||||| | Sbjct 14059 TGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTA 14118 Query 1745 CTATCTCCTTCAATGATAATACTAATAGGTC-TTTCTGGCCGCGCAGCGGAATCCATACC 1803 || || ||||||| |||||| | |||| || |||||||||||||| |||| | Sbjct 14119 GACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCC---CT 14175 Query 1804 AAAATAAGCATCAGCCCATTCTTGCATCTCGTCAGGGACATTAGTGAATGAGGAGAGTCG 1863 || || || | ||||| ||| ||| ||| |||| || || | Sbjct 14176 AACATTTTCAGCTGCCCA-----GCA-CTC--------AATTGTTGAAGGAAGAACAACT 14221 Query 1864 AAACGGAGGAACCCACGGCTCCGGAGCCTTACTGAAAATTCTATCTAAATTAGAATTTAA 1923 ||| ||| ||| | || || |||| |||| |||| |||||| || | | || Sbjct 14222 AAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTAT 14281 Query 1924 ATTATGAAATTGAAATAAGTATTTCTCTGGGAGTTTCTCCCTTATTATTTGCATAGCCGT 1983 ||||||| ||||||||| | || |||| | ||| || || || | | | || || Sbjct 14282 ATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAA--TAGAAAG-CGC 14338 Query 1984 TTCTT---TAGATGGGGCGTTCAGAGCCTCTGCGGCAGCGTCATTAGCTGACTGGCAACC 2040 ||||| | |||| || | | || ||||| | | ||||| | || || |||| Sbjct 14339 TTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACC 14398 Query 2041 TCCTCTAGCACTTCGTCCGTCGATCTGAAATTCTCCCCATTCGAGAGT-ATCCCCGTCCT 2099 |||||||||| |||||| ||||| ||||| | ||||| ||| | || ||| | ||| | Sbjct 14399 TCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCG-GTGTAATCACAGTCTT 14457 Query 2100 TGTCGATGTAGGACTTGACGTCAGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAAT 2159 | ||||||| ||| || || || ||||||||||| || | ||| || ||| || Sbjct 14458 TCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TAT 14516 Query 2160 GTGTTGATCTTGTTGGGGAT--ACCATGTCGAAGAGTCGCTGATTCGTGCAGACGAACTT 2217 ||| || | | || |||| | || |||||| ||| | || | | ||| Sbjct 14517 GTGGTGCTAGTATT-AGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTT 14575 Query 2218 TCCTTCGAACTGAATAAGCACATGGAGATGAGGTTCCCCAT 2258 |||||||| |||||||| ||||| |||| |||||||| Sbjct 14576 GCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCAT 14616 Score = 100 bits (110), Expect = 5e-18 Identities = 238/354 (67%), Gaps = 17/354 (5%) Strand=Plus/Plus Query 798 TTATTGTATATGGCATGTACACATGCCTCTAATCCCGTGTATGCTACATTGAAAATTCGG 857 || |||||||| | || ||||| |||||||| || ||| ||| ||| || || Sbjct 13099 TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGC 13158 Query 858 ATCTATTTTTATGATTCGATAACAAATTAATAAAGTTTGAATTTTATATCATGATTTTCA 917 | ||||||||||| || |||||||||||| ||||||||||| ||||||| |||| Sbjct 13159 AGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAATTTTATTTCATGATATTCA 13218 Query 918 AGTACAT----AATTTACATAATATC--TGTCTGTTGCATAACGAACAGCTCTAATTACA 971 ||||||| ||| | ||| | || | | ||| ||||||||||| | | Sbjct 13219 AGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTGTCTACAGCTCTAATAATA 13278 Query 972 TTATTAAGAGAAATTACACCTAATTGATTT--ACATACAATAAGACTAAATATTTGAATC 1029 || |||| | ||| ||||||||| | | | | || || | || || |||| ||| Sbjct 13279 TTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATTACACGAA--ATTTAAATA 13336 Query 1030 TACTTA--AATATGTCATCCCAGAAGCTGTCACTGATGTCGTCCAGACTTGGAAATTGAG 1087 |||| || | || || | || | || | || |||| || | ||| ||||| Sbjct 13337 CTCTTAAGAAAACGT-ATGTCGGAGGACGTAAACGA----GTCCTGATCTTGAAGTTGAG 13391 Query 1088 AAATGCCTTGTGGAGACCCAGTGCTCTCCGCAGGCTGTGGTTGAACCGTATCTG 1141 || || ||||| ||| |||| | ||| |||| |||||||||| || || || Sbjct 13392 GAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGAATTTG 13445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8016313884908