Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_016984.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq19028 396 5e-107 >seq19028 Length=31091 Score = 396 bits (438), Expect = 5e-107 Identities = 676/976 (69%), Gaps = 31/976 (3%) Strand=Plus/Plus Query 1618 GCATTCTTTAAAGCCCAATTTCTTAGTGCGCTATTTTTCTCTTCATCCAAGAACTCTTTA 1677 ||||| | |||| ||||||| ||| | ||||||| || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1678 TAGCTAGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGA 1737 ||||| ||| | || || |||||||| | |||||| | || || ||||| || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1738 ACTGGCTTTCCGTATTTTG---TGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCC 1794 || ||| ||||||||||| || |||| ||| | |||||||||||||| || || Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGA---CCAATTGCTTTGGGCCCCCATAAACTCT 13971 Query 1795 TTAAAGTGCTTTAGATAATGCGGATCAACGTCATTAATGACGTTATACCAGGCGTCGTTA 1854 |||||||||||||||||||||||||| |||| || ||||| |||||||||||| | || Sbjct 13972 TTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTT 14031 Query 1855 TTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGTCCCAGGGAC 1914 || | || | | || | ||| || || | || || |||||||| | || Sbjct 14032 GAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGAT 14091 Query 1915 CTGGCCCACATTGTCTTCCCCGTTCTACTCTCACCCTCCAACACTATACTCATGGGTC-T 1973 || |||||| ||||||||| |||||| ||||||||| | || |||||| |||||| | Sbjct 14092 CTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGT 14151 Query 1974 TAAAGGCCGCGCAGCGGCACTGACAACGTTCTGTGCAGCCCACTCCTCAAGTTCTGTCGG 2033 ||| ||||||||||||||| ||| || | || ||||| ||||| | || || Sbjct 14152 TAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAATTGTTGAAGG 14211 Query 2034 AACTTGATCAAAANNNNNNNNNNNNNNNNNNGAAACATAAACCTCCGCTGGAGGTTGAAA 2093 || | | ||| ||||||| || | || || || Sbjct 14212 AAGAACAACTAAAAGGACT--------------AACATAAGGTTCAGGAGGGGGCATGAA 14257 Query 2094 AATCCTATCTAAATTAGATTTTAAATTATGATATTGAAAAATAAAATCTTTG--AGGAGT 2151 || | |||||| || | || |||||||||||| ||||| || ||||| | | | Sbjct 14258 TATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAAACTTTGCTGGCATT 14315 Query 2152 TTCTCCCTTATTATTGCTAAAGCTGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCA 2211 || || || || || | | ||| ||||| || ||| |||| || ||||| | Sbjct 14316 TTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGAT 14375 Query 2212 GCATCATTAGCTGTCTGTTGACCTCCTCGACCATATCTTCCATCGATCTGAAACTGACCC 2271 ||||||| | ||| ||| |||||||| | || ||| ||||||||| ||||| | ||| Sbjct 14376 ACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCC 14435 Query 2272 CAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCT 2331 |||||| ||||||||| ||| ||| ||||||| ||| ||||| || || ||||| Sbjct 14436 CAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCG 14495 Query 2332 CCCTGGAAGTTTGGGTGGAATTGGGAGGCGTTATTAGGGTGAGTGACATCGAAATGTCTG 2391 ||||||||||||||| || || | ||||||| || ||| |||||| ||||| Sbjct 14496 GATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTA 14555 Query 2392 GGGTTTCTGAACTTGGATTTACCTTTGAATTGGATGAGGGCGTGGATATGCAGAGACCCA 2451 |||||||| || | | || |||| |||||| || ||||| ||| |||| | |||| Sbjct 14556 GGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCA 14615 Query 2452 TCCTGGTGTTTCTCTTGTGCCACTCTGATAAATAGTTTATCAGATGGGCAATTTATC-GA 2510 ||||||||||| ||||| ||||| ||| ||||||| || || ||| | | | Sbjct 14616 TCCTGGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGT 14673 Query 2511 CCGAAGAATG-TCGAGCATTTGTTCTTTGGGTATTGGGCATTTGGGGTAAGTAAGGAAGA 2569 ||| || || | ||||| ||||| || | || ||||| || | ||||| || | Sbjct 14674 TTCAAG--TGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATA 14731 Query 2570 TATTTTTTGCATTAAC 2585 | ||||| | ||| || Sbjct 14732 TGTTTTTAGAATTTAC 14747 Score = 138 bits (152), Expect = 2e-29 Identities = 225/322 (70%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 1004 ACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAGATACGGATCTATTTCTATGATTCA 1063 |||||||| ||||| ||||| ||| || ||| | ||| | ||||| ||||| Sbjct 13117 ACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGT 13176 Query 1064 GTATCGAATTAATAAAGATTGAATTTTATTATATTTGAACTTT--GTACATGAATTGTTT 1121 ||||| |||||||||| ||||||||||||| || || || |||||| | ||||| Sbjct 13177 GTATCAAATTAATAAATATTGAATTTTATTTCAT--GATATTCAAGTACATCCACTGTTT 13234 Query 1122 GTGCTAATACATGCCATAATACATGGTCGACAGCTCTAATTACATTGTTTATACTAATTA 1181 | | | ||||| ||||||||| ||| ||||||||||| | |||||| |||||||| | Sbjct 13235 GCTCAATTACATTGAATAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAA 13294 Query 1182 CAGCTAAATTATTTAAAAACAGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAG 1241 || |||| | |||||| || || | ||||||| ||||||||| | Sbjct 13295 CACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATG 13354 Query 1242 TCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACG 1301 || |||| |||| |||| ||| |||| | || ||| |||||| | || Sbjct 13355 TCGGAGGACGTAAACGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTT 13414 Query 1302 CTTTCCTCAGGTTGTGATTGAA 1323 | |||||||||||||| ||||| Sbjct 13415 CCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678475486734