Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_016998.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq19028 156 7e-35 >seq19028 Length=31091 Score = 156 bits (172), Expect = 7e-35 Identities = 612/944 (65%), Gaps = 45/944 (5%) Strand=Plus/Plus Query 1571 TTTTCCTCTTTGTCGAGGAAATATTTATAACTGGCCCCCTCTCCTGGATTACATAGCACA 1630 |||||||| | ||||||| | |||||| |||| || ||||| || | | Sbjct 13831 TTTTCCTCCT---CGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1631 ATTGATGGGATACCTCCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAG 1690 |||| || || || || || || | || ||| | |||||||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1691 TCTTTCTGGGCCCCAATGAGCTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGAGTGACA 1750 | | |||||||| || | |||||| |||||||||| ||| |||||| ||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG------ATAATGCGGATCGACG 14001 Query 1751 TCATCAATGACGTTATATTCCGCTTCATTTGAATAAACCCTAGAATTGAAATCCAGATGT 1810 | |||||||| |||||| || | ||||||||||| || ||| ||||| | ||| Sbjct 14002 TTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGA 14061 Query 1811 CCACTCAAATAATTATGTGGGCCCAATGCACGAGCCCACATCGTCTTCCCCGTTCGACTA 1870 || | | ||||||||||| || || | | |||||| |||||||| |||| | Sbjct 14062 CCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGAC 14121 Query 1871 TCACCCTCGACGATGATACTAATAGGTC-TCTCCGGCCGCGCAGCGGCACCTCTTCCAAA 1929 |||||||| | || ||||| | |||| | ||||||||||||||| | || || Sbjct 14122 TCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT---AAC 14178 Query 1930 ATAATCATCAGCCCATTCTTGCA-TATCTTGTGGGACGTTAGTGAATGAGGAGAGTGGAA 1988 || ||| | ||||| ||| | |||| |||| || || || Sbjct 14179 ATTTTCAGCTGCCCA-----GCACTCAATTGT----------TGAAGGAAGAACAACTAA 14223 Query 1989 ACGGAGGAACCCATGGATTCGGAGCCTTACTAAATATCCTGTCCAGATTACTGGAC-AGA 2047 | ||| ||| | || | |||| | ||||| | || | ||| | || | | Sbjct 14224 AAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTA-ATTTTGGAACTATA 14282 Query 2048 TTGTGATACTGGAAGAGAAACTTCTCCGGAAGTTTCTCTCGGATTATTTGCATCGCAGCT 2107 || ||||| || || |||||||| | || | ||| |||| || || | ||| || Sbjct 14283 TTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCT 14342 Query 2108 T-GTTTGCTGGGTGCATTTATTGCCTCTGCGGCAGCGTCGTTAGCAGTCTGCTGACCTCC 2166 | ||| | | ||| ||| || ||||| | | || || | || || |||||| Sbjct 14343 TCAATTGAT-GTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCC 14401 Query 2167 TCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCATTCGAGAGT-ATCTCCGTCCTTGT 2225 ||||||||||| || ||||| || || | ||||| ||| | || ||| | ||| || Sbjct 14402 TCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCG-GTGTAATCACAGTCTTTCG 14460 Query 2226 CGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTTGGATGGAAATGTG 2285 ||||||| ||| || || || ||||||||||| || | |||||| ||| ||||| Sbjct 14461 CGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTG 14519 Query 2286 CTGACCTGGT-TGGGGAT--ACCAAGTCGAACAATCTCTGATTTGTGATCTGTGCTTTGC 2342 || || || | |||| | | ||||| ||| | ||| | | ||||| |||| Sbjct 14520 GTG--CTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGC 14577 Query 2343 CTTCGAGTTGGATAAGCACGTGGAGATGAGGTTGCCCATCTTCGTGTAACTCTCGGCAGA 2402 |||||| ||| ||||| | ||| |||| || |||||| | |||| ||| | |||| Sbjct 14578 CTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGA 14637 Query 2403 TTTTGATGTATTTCTTATTTGATGGAAGAGATA-GGGTTTGTAATTGGGAAAGTGCTGCT 2461 | | | | | |||||||| ||| ||| | |||| | | ||| || Sbjct 14638 CTCTAAAACAGT--TTATTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTG-A 14694 Query 2462 TCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATATATTTTT 2505 ||||| | || || || | |||| |||| |||||||| ||||| Sbjct 14695 TCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTTT 14738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8448158407838