Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_017000.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq19028 181 2e-42 >seq19028 Length=31091 Score = 181 bits (200), Expect = 2e-42 Identities = 572/879 (65%), Gaps = 28/879 (3%) Strand=Plus/Plus Query 1514 GAATTTTGCATTGTGTATCGTCCAGTTTCGTAATGCTGTGTTTTCCTCTTTGTCGAGGAA 1573 ||||| |||||| || | | ||| ||| |||| | |||| || | |||||||| Sbjct 13788 GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAA 13847 Query 1574 ATCTTTATAACTGGACCCTTCGCCAGGATTGCAAAGCACGATTGATGGGATACCACCTTT 1633 |||||||| ||||| ||||||||||| | | ||||| || || ||||| || Sbjct 13848 CTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTT 13907 Query 1634 AATTTGAACAGGCTTGCCGTATTTGCAATTTGATTG-CCAGTCCTTTTGAGCCCCAATCA 1692 || | |||||| | |||||||| | ||| | | ||| | |||| ||||| || | Sbjct 13908 TATCTTTACAGGCCTTCCGTATTTT-ACCTTGCTGGACCAATTGCTTTGGGCCCCCATAA 13966 Query 1693 ATTCTTTCCAGTGCTTTAGCTTTAGATAGGTGGGCGCGATGTCGTCTATGATGTTGTACT 1752 | ||||| |||||||||| ||| || ||| || || |||||||| ||| Sbjct 13967 ACTCTTTAAAGTGCTTTAG------ATAATGCGGATCGACGTTATCAATGATGTTATACC 14020 Query 1753 GCACATGGTTTGAATAGACCCGCGAGTTGAAATCGAGGTGTCCACTCAGATAATTGTGGA 1812 ||| |||||||| | || ||||| | || || | || ||||| || Sbjct 14021 AGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTG 14080 Query 1813 CCCCCAATGCACGCGCCCACATCGTCTTCCCCGTTCGTGAATCACCTTCGACGATGATAC 1872 || || | | |||||| |||||||| |||| || ||||| || | || |||| Sbjct 14081 GTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATAC 14140 Query 1873 TAATAGGTCTCTCC-GGCCGCGCAGCGGCACCTCTCCCGAA-ATAATTATCAGCCCAATC 1930 | | |||| | ||||||||||||||| |||| || || | | | ||||| Sbjct 14141 TCTTGGGTCGTTAATGGCCGCGCAGCGGCA----TCCCTAACATTTTCAGCTGCCCA--- 14193 Query 1931 TTGCATCTCCTTGGGCACGTTAGTGAATGAGGAGAGTTGAAACGGAGGAGACCATGGCTC 1990 ||| || || || |||| || || ||| ||| | | || || Sbjct 14194 --GCA----CT----CAA-TTGTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTC 14242 Query 1991 CGGAGCTCTTGTGAAAATCCTATCTAGATTGCTAGAGAGGTTGTGATATTGGAAGAGAAA 2050 |||| |||| || | ||||| || | | || |||||||| || ||||| Sbjct 14243 AGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAA 14302 Query 2051 CTTCTCCGGCAGTTTCTCTTTTATTATTTGCATGGCTTCTTCCTTTGAAGAAGCATTTAA 2110 ||| | |||| ||| ||| | || || | |||||||| |||| | |||| |||| Sbjct 14303 CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAA 14362 Query 2111 CGCCTCGGAGGCTGCATCATTAACTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGAC 2170 ||| || | | | ||||||| ||| || ||||||||||||||||| ||| |||| Sbjct 14363 CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGAT 14422 Query 2171 TTGAAAATGACCCCATTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGA 2230 |||||||| ||||| ||| |||||||| ||| ||| ||||||| ||| ||||| || Sbjct 14423 TTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGA 14482 Query 2231 GGATGATTTTGCACTCTGTATATTGGCATGGGAGACGGAAGAGGTGTTTGGATGTTTGAG 2290 |||||||| || || | || | ||| | || || || ||||| ||| Sbjct 14483 AGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGAT 14542 Query 2291 GTCGAAGAATCTGCAATTCGTGCACTGGAACTTTCCTTCGAATTGAATGAGAGCATGCAG 2350 |||||| ||| || | | || ||| |||||||||||||| || ||||| Sbjct 14543 ATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCT 14602 Query 2351 ATGCGGTTCCCCATTCTCGTGAAGTTCTCTGCAGATTCT 2389 ||| |||||||| || ||| |||| |||| ||| Sbjct 14603 ATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCT 14641 Score = 147 bits (162), Expect = 4e-32 Identities = 256/369 (69%), Gaps = 24/369 (7%) Strand=Plus/Plus Query 882 GAATCATACGGAGAACGCCTTACTATTGTATATGGCATGTACTCATGCCTCTAATCCTGT 941 || |||||| || || || || |||||||| | |||||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 942 GTATGCTACTCTCAAGATTCGGATCTATTTTTATGATTCGATATCCAATTAATAAATTTT 1001 ||| |||| | | | || | ||||||||||| |||| ||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1002 GAATTTTATTTCATGATTCTCAAGTACAT--AATTT----ACATATGCTTTGTCTGTTGC 1055 ||||||||||||||||| |||||||||| | | | || | | ||| | | | Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1056 AAAACGAACAGCTCTGATTACATTGTTAATGGAAATAACACCTAATCGATCTAAATACAA 1115 | |||||||| || | ||||||||| ||||||||||||||| |||||| | Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1116 CATGACTAAATATTTAAAT----CTATGTAAA--TATGTCGTCCCAGAAGCTCGAAGTGA 1169 ||| || | |||||||| || | ||| ||||||| || || || | Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCG-----GA----GGACGTAA 13367 Query 1170 TATCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGAAGATCCAGTTTGTTCCTGAGGTT 1229 |||| || | |||||| ||||| || |||||||||| ||||| ||||| ||||| Sbjct 13368 ACGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTT 13427 Query 1230 GTGGTTGAA 1238 ||||||||| Sbjct 13428 GTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8387380289796