Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_018716.1 Length=2616 Score E Sequences producing significant alignments: (Bits) Value seq19028 179 6e-42 >seq19028 Length=31091 Score = 179 bits (198), Expect = 6e-42 Identities = 255/354 (72%), Gaps = 16/354 (5%) Strand=Plus/Plus Query 1518 TTTTCCTCTTTCTCGAGGAAATCTTTATAGCTGCACCCCTCTCCTGGATTGCACAGCACG 1577 |||||||| ||||||||| |||||||||||| | || |||||||||| | | Sbjct 13831 TTTTCCTC---CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1578 ATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTAC--AGTTGGATTGC 1634 |||| || ||||| || || || | || ||| |||| || ||||| | |||| | Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---C 13944 Query 1635 CAATCCTTTTGGGCCCCAATCAACTCTTTCCAGTGCTTTAGCTTTAGGTACTGCGGAGTG 1694 |||| |||||||||| || |||||||| ||| ||||||| || |||||| | Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGT------GCTTTAGATAATGCGGATCG 13998 Query 1695 ACATCATCGATAACGTTATACTCCACATCATTGGAGTAAACCCTAGCATTGAAATCAAGA 1754 || | ||| || | ||||||| ||| ||| || |||| || ||| ||||| | | Sbjct 13999 ACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAA 14058 Query 1755 TGACCGCTCAGATAATTATGTGTACCTAAAGCTCTGGCCCACATTGTCTTTCCCGTTCTA 1814 ||||||| || |||||||||| ||||||| ||| |||||| |||||| || |||||| Sbjct 14059 TGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTA 14118 Query 1815 GAACCCCCTTCGACGATCAAACTAATAGGACGTT-CTGGCCGCGCAGCGGCATC 1867 || | || || | || | ||| | || |||| |||||||||||||||||| Sbjct 14119 GACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATC 14172 Score = 96.9 bits (106), Expect = 6e-17 Identities = 247/369 (67%), Gaps = 24/369 (7%) Strand=Plus/Plus Query 846 GAATCATACGGAGAACGCCTTGTTATTGTATATGGCATGTACTCATGCATCAAACCCTGT 905 || |||||| || || || ||||| |||||| | ||||||||||| || ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 906 GTATGCAACTTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATTTT 965 ||| ||| | | || || | ||||||||||| || ||||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 966 GAATTTTATATCATGATTCTCGAGTACAGCATTTACATATGGTCTATTAACGGCGAA--- 1022 ||||||||| ||||||| || |||||| | | | || || ||| || ||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACT--GTTTGCTCAATT-ACATTGAATAA 13253 Query 1023 ------GCTAACAGCATCAATTACATGATTAATACCAATTACTCCTAACCTATCTAAGTA 1076 | ||||| ||| | || ||||||| ||| || ||||| | ||||| | Sbjct 13254 TACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAA 13313 Query 1077 CAACA--ACACTAAATGTCTAAACCTATTTA-AATAAATCTGCCCAGAAGCTGTCAGAGA 1133 || |||| |||| | || || || | || | | || | || | || | || Sbjct 13314 TTTCATTACACGAAAT-TTAAATACTCTTAAGAAAACGTATG-TCGGAGGACGTAAACGA 13371 Query 1134 AGTCGTCCAGACTTGGAAGTTGAAGAAGGCTCTGAGAAGACCCAATTCCTTCCTCAGGTT 1193 |||| || | |||||||| ||| ||| || ||||| || ||||||||||||||| Sbjct 13372 ----GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTT 13427 Query 1194 GTGGTTGAA 1202 ||||||||| Sbjct 13428 GTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8259426357076