Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_018717.1 Length=2599 Score E Sequences producing significant alignments: (Bits) Value seq19028 165 1e-37 >seq19028 Length=31091 Score = 165 bits (182), Expect = 1e-37 Identities = 248/349 (71%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 1497 ATTATCTTCTTTCTCGAGGAAAGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCAC 1556 ||| | ||| | ||||||||| |||||||||||||| ||||||||||| | | Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1557 GATTGATGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGATTG-CC 1615 ||||| || || || || || || | || ||| ||||||| || | ||| | | || Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTT-ACCTTGCTGGACC 13945 Query 1616 AGTCTTTTTGGGCCCCAAGGAGTTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGA 1675 | | |||||||||| | | ||||| |||||||||| ||| ||||| ||| Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG------ATAATGCGGATCGA 13999 Query 1676 CGTCATCAATGACGTTATACTCCACTGCATTTGAATAGACCCTAGAATTGAAATCAAGAT 1735 ||| |||||||| ||||||| | ||||||||| | || ||| ||||| | || Sbjct 14000 CGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAAT 14059 Query 1736 GACCGCTCAAGTAATTATGTGGGCCTAAGACCCTAGCCCACATCGTCTTCCCTGTTCTTG 1795 |||||| | |||||||||||| ||||| || |||||| |||||||||||||| | Sbjct 14060 GACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAG 14119 Query 1796 AATCACCTTCGACTATGAGACTCAATGGTC-TTTCTGGCCGCGCAGCGG 1843 | ||||| || | | | |||| |||| || |||||||||||||| Sbjct 14120 ACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 78.8 bits (86), Expect = 2e-11 Identities = 107/149 (72%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 826 GAATCATACTGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGT 885 || ||||||||| || || ||| ||||| || | |||||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 886 ATATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATCTTAAATTAATAAAATTT 945 |||| || | | | || | ||||||||||| | | ||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 946 AAATTTTATTGAATGATCTTCAAGTACAT 974 ||||||||| ||||| ||||||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACAT 13225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8205045935670