Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_019034.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq19028 246 5e-62 >seq19028 Length=31091 Score = 246 bits (272), Expect = 5e-62 Identities = 464/674 (69%), Gaps = 25/674 (4%) Strand=Plus/Plus Query 1653 TTCTTCTCTTCCTCCAAGAACTCTTTATAGGACGATGTCGGGCCAGGATTGCAGAGGAAG 1712 || || || ||||| | ||||||||||||| || || || ||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1713 ATTGTCGGGATTCCGCCTTTAATTTGAATTGGCTTGCCGTATTTCGTGTTGCTTTGCCAA 1772 |||||||| || || || || || | | ||| | |||||||| ||||| |||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1773 TCACGCTGGGCCCCCATGAACTCTTTGAAATGTTTTAGATAGTGCGGATCCACGTCGTCG 1832 | | ||||||||||| |||||||| || || |||||||| |||||||| |||| || Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1833 ATGATGTTGTACCAGGCGTCATTTGAATAGACCTTGGGACTAATGTCCAAATGACCACAT 1892 |||||||| |||||||| | ||||||||| | || | | | || |||||||| ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1893 AAGTAATTATGTGGACCCAGGCTTCGTGCCCACATTGTTTTGCCCGTACGACTATCGCCC 1952 | |||||||||||| || | || ||||||| ||| || || || | | || ||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1953 TCGATAACAATACTTTTAGGTC-TCCATGGCCGCGCAGCGGCTGCCTTCACATTGTCGGC 2011 || || |||||||| || |||| | |||||||||||||||| || | ||||| || || Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2012 TACCCACTGCTCAAGTTCGTCCGGAACTTGATCAAATGAAGAGGACATAAAAGGAGATCT 2071 | |||| ||||| ||| | || ||||| | |||||||| Sbjct 14188 TGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAAC 14233 Query 2072 ATAAATCTCTACGGGAGGAGTGAATATCCTCTCTAA-ATTGGAATTAAGATTATGAAATT 2130 |||| || || || ||||||| | ||||| |||||| | | ||||||| ||| Sbjct 14234 ATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACT-ATATTATGATATT 14292 Query 2131 GTAATACATAATCCTTTG-GGGC--TAATTCTTTAATTAGTCGTAGGGCTTC-AGACTTA 2186 | |||| | | ||||| ||| | |||| |||| | || ||||| | || Sbjct 14293 GAAATAGAAA---CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTG 14349 Query 2187 CTGCCTGCGTTCAGCGCCTGTGCGTAAGCATCGTTTATTGATTGTTTGCCTCCTCTCGCT 2246 || || | | ||| | ||| | |||| ||| ||| ||| |||||||| || Sbjct 14350 ATG-TAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCA 14408 Query 2247 GATCGTCTATCGATCTGGAATTGGCCCCAGTCGAGGACGTCTCCGTCCTTCTCAAGATAT 2306 ||||||| |||||| || || | |||||||||| | || | ||| ||| | | ||| Sbjct 14409 GATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTAT 14468 Query 2307 GCCTTGACATCGGA 2320 ||| ||||| || Sbjct 14469 TTCTTAACATCTGA 14482 Score = 161 bits (178), Expect = 2e-36 Identities = 267/385 (69%), Gaps = 3/385 (1%) Strand=Plus/Plus Query 963 GAATCATACTGAGAACGCGTTATTATTGTATTTGGCATGTACGCATGCTTCGAATCCTGT 1022 || ||||||||| || || ||| |||||| | | || ||||| || |||||||| Sbjct 13080 GACTCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1023 GTATGCAACGCTGAAGATACGCATCTATTTTTACGATGCCGTCACGAATTAATAAAATTT 1082 ||| || ||| | ||||| |||||||| || || | |||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1083 AAATTTTATTTCATGAAATTCCTGAACTTCGATACAAGTCCTAATTACATTATGTAATAC 1142 ||||||||||||||| |||| | || || | | ||||||||| |||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1143 ATGATCGACAGATCTAATAACATTATTAATGGAAATTACACCTAACATGTCTAAGTACTT 1202 || || |||| |||||||| ||| ||||| ||| |||||||| |||||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1203 AAGGACTTGGTATTTAAATACTCTCAAGAAAGTCCCAGACCGAGTCTGTGAAGTCGTCCA 1262 | || | ||||||||||||| |||||| | | ||| || || |||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1263 GATTCGGAAGTTCAGATAACACTTGTGAAGACCCAGTTCCTTCCGGAGGTTGTGGTTGAA 1322 ||| |||||| || || ||||||||| ||||||||||| |||||||||||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1323 CCGGATCTGGATGGTGATGATGTCG 1347 || || || || ||| |||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8783944465970