Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_020257.1 Length=2685 Score E Sequences producing significant alignments: (Bits) Value seq19028 149 1e-32 >seq19028 Length=31091 Score = 149 bits (164), Expect = 1e-32 Identities = 242/347 (70%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 1582 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGAATTGCAAAGCACG 1641 |||||||| | ||||||| |||||||| |||| |||| |||||| | | | Sbjct 13831 TTTTCCTCCT---CGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1642 ATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCAG 1701 |||| ||||| || || || || | || ||| | ||||| || ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1702 TCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGGGCGACG 1761 | || |||||||| || || ||||| |||||||||| ||| ||||| ||||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAG------ATAATGCGGATCGACG 14001 Query 1762 TCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGAAATCTAGGTGT 1821 | |||||||| ||||||| || | || || |||| || ||| ||||||| || Sbjct 14002 TTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGA 14061 Query 1822 CCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACATCGTCTTCCCTGTACGACTA 1881 |||| | |||||| |||| ||||||| | |||||| ||||||||||| | | Sbjct 14062 CCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGAC 14121 Query 1882 TCGCCCTCGACGATGATACTAATAGGTCGCTCA-GGCCGCGCAGCGG 1927 || ||||| | || ||||| | ||||| | | ||||||||||||| Sbjct 14122 TCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGG 14168 Score = 82.4 bits (90), Expect = 1e-12 Identities = 105/144 (73%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 914 CACACGGAGAATGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATAT 973 || || || ||||| ||||| |||||| | |||||||| ||||||||||||||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 974 GCAACCCTTAAGATTCGGATCTATTTTTACGATTCGATATCAAATTAATAAATTTTGAAT 1033 || | | | || | |||||||| || |||||||||||||||| |||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1034 TTTATTGAATGACGTTCGAGTACA 1057 |||||| |||| ||| |||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACA 13224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8480146891018