Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_021202.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq19028 237 3e-59 >seq19028 Length=31091 Score = 237 bits (262), Expect = 3e-59 Identities = 301/411 (73%), Gaps = 5/411 (1%) Strand=Plus/Plus Query 1594 TGAGGGTGATGAATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCTGAATTTTTATCCT 1653 ||| |||| |||||||||||| | || | ||||| |||||| |||||| |||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1654 CATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTTGGGA 1713 | | | | |||||||||| || || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1714 TTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGG 1773 | ||||| || || | | || | ||||| || ||||| ||| | ||||||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1774 CCCCCATGAATTCTTTAAAGTGCTTTAGATAATGGGGGTCTACGTCATCAATGACGTTAT 1833 ||||||| || ||||||||||||||||||||||| || || |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1834 ACCAAGCATCATTACTGTATACCTTT--GGGCTTAGATCAAGATGTCCACACAAATAATT 1891 |||| |||| ||| || ||| ||| | | ||| | ||| || || | ||||| Sbjct 14018 ACCAGGCATTATT--TGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATT 14075 Query 1892 GTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTATCAC 1951 |||||||| | ||||| |||||| ||| || ||||| | | ||||| || || || Sbjct 14076 ATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGAC 14135 Query 1952 AATACTTTTGGGTC-TCCAAGGCCGCGCAGCGGCACCACTCACATTTTCAG 2001 |||||| ||||||| | | ||||||||||||||| | || |||||||||| Sbjct 14136 AATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Score = 199 bits (220), Expect = 7e-48 Identities = 312/438 (71%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 954 GAATCATACGGAGAATGCATTATTGTTGTATATGGTTTCTACTCATGCTAGTAATCCTGT 1013 || |||||| || |||||||| ||||||||| ||| |||||||| ||||||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1014 ATATGCGACTTTGAAAGTCCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATT 1073 |||| ||| ||| | |||| ||||| ||||| | |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1074 GAATTTTATTATATTTGAATGTCTTACATATTCTGTGTTTTCCAATACATCCCATAATAC 1133 |||||||||| || | | ||||| |||| | || | ||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1134 A-TGATTACATGCTCTAATTACATTATTAATACTAATTACACCCAAATTATCTAAATATT 1192 | || |||| |||||||| | ||| ||||||||||| ||||| || |||||| ||| Sbjct 13257 ATTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1193 TCA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTC 1251 ||| |||| ||| ||||||||||||||||| | ||| |||| |||| |||||| Sbjct 13316 TCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1252 CAGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTG 1311 | ||||| |||| | || ||| | ||| | || | |||||||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1312 AATTGTATTTGGATCGTTATGATGTC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTT 1370 ||| | ||||| || || ||||| || || | ||| |||||| | ||| || Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGTT 13493 Query 1371 GGTTATCTTGAAATATAG 1388 | |||||||||||||| Sbjct 13494 GAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8652884700190