Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_021341.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq19028 269 5e-69 >seq19028 Length=31091 Score = 269 bits (298), Expect = 5e-69 Identities = 480/694 (69%), Gaps = 21/694 (3%) Strand=Plus/Plus Query 1586 AATGGTTCCGTGAGGGTGATGAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAA 1645 ||||||| |||| |||| |||||||||||| | | || |||| ||||| | | Sbjct 13768 AATGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATA 13827 Query 1646 TTCTTATCCTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAG 1705 || || ||||| || | | |||||||||| || || || ||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1706 ATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAG 1765 |||||||| || || || || || | | || | ||||| ||| ||||| ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1766 TCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCA 1825 | |||||||||||||| || ||||| ||||||||||| || || ||||| |||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1826 ACCACGTTGTACCACGCATCATTGCTGTATACTTTAGGGCTTAGATCAAGGTGCCCACAT 1885 | | ||| ||||| |||| ||| || | |||| | | ||| | || || ||| Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1886 AAATAATTATGTGGACCCAGTGACCGTGCCCACATAGTCTTCCCTGTACGACTCTCACCC 1945 | ||||||||||| || | || | ||||||| ||||||||||| | | ||||||| Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 1946 TCTATGACTATACTTATGGGTC-TCCATGGCCGCGCAGCGGCATCCCTTACATTATCGGC 2004 || ||||| ||||| |||||| | |||||||||||||||||||||| ||||| || || Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2005 AGCCCAGCATTCAAGTTCTTCTGGAACTCGATCGAACGAAGACGATAAAAATGGACAAAC 2064 |||||||| |||| || || ||| ||||| | ||| |||| ||| Sbjct 14188 TGCCCAGCACTCAA-TTGTT-------------GAAGGAAGAACAACTAAAAGGACTAAC 14233 Query 2065 AAATTCCTCTAGAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTG 2124 | | || |||| || || || | |||||| || | | || ||||||| |||| Sbjct 14234 ATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG 14293 Query 2125 TAAAACGAAATCTTTGGGGGC--TAATTCCTTAATTACGATAAGAGCCTC-TGACTTACT 2181 ||| |||| ||||| ||| | ||| |||| | ||| || || | | || | Sbjct 14294 -AAATAGAAA-CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGAT 14351 Query 2182 TCCGCTGTTAAGCGCCTTGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGA 2241 || |||| ||| | || | | ||||| | || ||| || ||||| ||||| Sbjct 14352 GTAGCACTTAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGA 14410 Query 2242 TCTTGCATCGATCTGAAACTCTCCCCATTCGATG 2275 || | ||||||| ||||| | ||||| ||| || Sbjct 14411 TCGTCCATCGATTTGAAAATTGCCCCAGTCGGTG 14444 Score = 120 bits (132), Expect = 5e-24 Identities = 260/383 (68%), Gaps = 7/383 (2%) Strand=Plus/Plus Query 963 CATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTAT 1022 ||||| || ||||| || |||||||| | |||||||| ||| || || ||| Sbjct 13084 CATACTGAAAATGCA---TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1023 GCTACTTTGAAGATCAGG-ATCTATTTCTATGATTCTGTTCAAAATTAATAAAGTTCGAA 1081 |||| ||| || || | | ||||| ||||| ||| ||||||||||| | ||| Sbjct 13141 TGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1082 TTTTATTATATTTGAATGATCTACATAAATTGTTCCGTGCAAAACATCCCATAATACATG 1141 ||||||| || | | | ||||| | |||| | | |||| ||||||||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1142 ATTCACAGATCGAATTACATTATTAATGGATACAATCCCTAAATTATTTAAGTATTGCAT 1201 | |||| || ||| | ||| ||||| | || ||||| | ||| ||| ||| Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1202 -ACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGA 1260 ||| ||| ||||||||||||||||| | ||| |||| |||| ||||||| || Sbjct 13320 TACAC-GAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGA 13378 Query 1261 TCTGGAAGATCAGAAAACATTGGTGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACT 1320 ||| |||| | || ||| || ||| || || | |||||||||||||||||||| Sbjct 13379 TCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATC 13438 Query 1321 GTATTCGGATCGTGATTATGTCG 1343 | ||| | || |||||||||| Sbjct 13439 GAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700867424960