Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_022073.1 Length=2825 Score E Sequences producing significant alignments: (Bits) Value seq19028 214 3e-52 >seq19028 Length=31091 Score = 214 bits (236), Expect = 3e-52 Identities = 486/719 (68%), Gaps = 29/719 (4%) Strand=Plus/Plus Query 1723 TTTTTCTCCTCGTCGAGGAATTCGGTATAAGAAGAAGTTGGCCCTGGATTGCAGAGGAAG 1782 ||||| ||||| |||||||| || |||| ||||| || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1783 ATTGTCGGAATTCCTCCTCTGACCTGAATGGGTTTTCCGTATTTGGTGTTGCTTTGCCAA 1842 |||||||| || || || | | || | || |||||||||| ||||| |||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAA 13947 Query 1843 TCCCTCTGGGCCCCCATAAACTCCTTGAAGTGCTTTAAATAGTGGGGGTCTACGTCATCA 1902 | || ||||||||||||||||| || |||||||||| ||| || || || |||| |||| Sbjct 13948 TTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCA 14007 Query 1903 ATGACGTTGTACCAGGCATCATTACTAAAAACCCTAGGGCTTAAATCCAGGTGTCCACAC 1962 |||| ||| |||||||||| ||| | ||| || | ||||| | || || || Sbjct 14008 ATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCAT 14067 Query 1963 AAATAATTATGTGGGCCTAATGATCTGGCCCACAATGTCTTGCCTGTTCTAGAATCTCCT 2022 | ||||||||||| ||||| ||||| |||||| |||||| ||||||||||| || || Sbjct 14068 AGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCC 14127 Query 2023 TCTACTACTATGCTAATCGGTCTCTCA-GGCCGCGCAGTGGCAGGCAACACATTCTCAGA 2081 || | || || || | |||| | | |||||||||| |||| | ||||| |||| Sbjct 14128 TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGC 14187 Query 2082 GACCCACTCCTCTAACTCATCTGGAACTTGATCAAAAGAAGAAGAAAGAAAGGGGGACT- 2140 |||| ||||| || ||| || |||||| || ||| ||||| Sbjct 14188 TGCCCA------GCACTCAATTG----TTG----AAGGAAGAACAACTAAA--AGGACTA 14231 Query 2141 -TATAAGGGGGAATTGCAGAAGTAAAAATCCTATCAAAATTAGAGTGCAGATTATGATAC 2199 |||||| | | | | || || | ||| || || | | ||||||||| Sbjct 14232 ACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATAT 14291 Query 2200 TGCAGTACATAATCTTTG--GGCATTAATTCTTTAATAATATTAAGAGCCTCCTGCTTAC 2257 || | | | || ||||| |||||| |||| |||||||| ||| || || | | Sbjct 14292 TGAA--ATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTG 14349 Query 2258 TTCCTGC-GTTATTGCTGAGACGTATGCATCGTTTGCAGATTTCTG-GCCTCCTCTTGCA 2315 | || ||| ||| | || |||| |||| | | | || |||||||| ||| Sbjct 14350 ATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTG-TATGTGAACCTCCTCTAGCA 14408 Query 2316 GATC-TCATCGTCGACCTGAAACTCACCCCAGTCGAGGGTGTCTCCGTCCTTTCCGATAT 2374 |||| || | |||| ||||| | ||||||||| | || | ||| || |||| | Sbjct 14409 GATCGTC--CATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGT 14466 Query 2375 ATGCCTTGACGTCGGAGGAGGACTTAGCGCGTTGAATGTTTGGGTGGAAACTGGCGCTA 2433 || ||| || || || || || |||||| ||| | |||||||||| | ||| |||| Sbjct 14467 ATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTA 14525 Score = 174 bits (192), Expect = 3e-40 Identities = 271/386 (70%), Gaps = 11/386 (3%) Strand=Plus/Plus Query 1036 TCATACAGAAAATGCTTTGTTATTGTATATGGCATGTACTCATGCTTCAAATCCAGTGTA 1095 |||||| |||||||| ||||| |||||| | |||||||| || ||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1096 TGCTACTTTGAAGATACGGATCTATTTCTATGATTCGATATCAAATTAATAAAGATTGAA 1155 | |||| ||| | ||| | ||||| ||||| ||||||||||||||| |||||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1156 TTTTATT----GAAGTTGAAAGCTGTACATCTATTGTATTCTGAAATACTTCGTACAATA 1211 ||||||| || || || ||||||| | ||| | || || ||| | | | |||| Sbjct 13200 TTTTATTTCATGATATTCAA----GTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1212 CATAATCAGCTGCCCTAATTACACTATTAATTGAAATTACACCAAGATTATCTAAATACT 1271 ||| || | || ||||| | | | ||||| ||| ||||| | |||||| | | Sbjct 13256 CATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1272 GAAGAACTTGAAATCTAAACACTCTTAAGAAATGCCAAGTCTGAGGACGTAAACGAGTCC 1331 | || ||||| |||| |||||||||||| | ||| |||||||||||||||||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1332 AGACTTGGAAGACTAAGAAACATTTGTGAATCCCCAGAGCCTTCCGGAGGTTGTGGTTGA 1391 || | |||| | |||| |||||||| ||| |||||| ||||||||||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1392 ACTGGATCTGGATGGTGATGATGTCG 1417 | | || || || ||| |||||| Sbjct 13436 ATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8924692301550