Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_022232.1 Length=2834 Score E Sequences producing significant alignments: (Bits) Value seq19028 214 3e-52 >seq19028 Length=31091 Score = 214 bits (236), Expect = 3e-52 Identities = 396/574 (69%), Gaps = 14/574 (2%) Strand=Plus/Plus Query 2182 ATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCTAATGCCGC 2241 ||||||||||||||| | ||| | | || | ||| || ||||| || | | || | Sbjct 14282 ATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTC 14341 Query 2242 CTCAGCAGAGCCTGCGTTTAAGGCTTCTGCTGCTGCATCATTAGCCGTCTGCTGACCTCC 2301 ||| || || |||| |||||||| | | ||||||| | || || |||||| Sbjct 14342 TTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCC 14401 Query 2302 TCTAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGTCGATGTAATCTCCGTCCTTCTC 2361 ||||||||||| || |||| || || | ||||||||| ||||||| | ||| ||| | Sbjct 14402 TCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGC 14461 Query 2362 GATGTATGCCTTGACATCTGAGGAGGATTTAGCTCCCTGGAAATTGGGGTGGAACTGGGT 2421 ||||||| ||| |||||||| || |||||||| ||||| || |||||| | ||| Sbjct 14462 GATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGT 14521 Query 2422 GGAATTATGAGGGTGCACGAGGTCGAAATGTCTTGGATTTCTGAACTGGGCTTTACCCTT 2481 | | ||| ||| || | || ||||| ||||| || ||||| || || || || || | Sbjct 14522 GCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTC 14581 Query 2482 GAATTGAATAAGGGCATGGAGGTGCAGAGACCCATCTTGATGTTGCTCTTGAGCAACTCT 2541 ||||||||||||||||||| || | |||||| || |||| |||||| ||||| Sbjct 14582 GAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCT 14641 Query 2542 GATAAATAGTTTATCAGATGGGCACTGGATTTTCTGTAATAGGTCTAAGGCTTGCTCTTT 2601 ||| ||||||| || || || | | | || | |||||| ||| ||||| Sbjct 14642 --AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATCTTT 14699 Query 2602 ATTTAAAGAGCATTTGGGATAAGTAAGGAAAATATTTTTAGCCTTAACTTGGAAACTTGC 2661 | | || ||||| ||| | ||||| || || ||||||| || || ||||| || Sbjct 14700 AGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTTTAGAATTTACCTGGAA---TGA 14756 Query 2662 TTGA---CGAGGCATTTTGCTGACGTATGCAATGGGTGCTCTCAAAACTCTACGGAATGG 2718 ||| | ||||||||| || ||| ||||||| ||| | | ||| | || | Sbjct 14757 ATGAAGCCTTGGCATTTTGTAGA--AATGAAATGGGTACTC-CGACTTCCTA-TGCATTG 14812 Query 2719 GGGGCTTTGGGTGCTCATTTATAC--CGAGCTCC 2750 || |||||||| || | | ||||| | |||||| Sbjct 14813 GGTGCTTTGGGAGCCCTTATATACTACTAGCTCC 14846 Score = 174 bits (192), Expect = 3e-40 Identities = 239/328 (73%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 1757 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAT 1816 || |||||||| | |||||| || || || ||||| || || | || ||| | |||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1817 TT-ACAGT--TGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGG 1873 || || | |||| | | | ||| ||||||||||| || || |||||||||||||| Sbjct 13930 TTTACCTTGCTGGAC--CAATTGCTT-TGGGCCCCCATAAACTCTTTAAAGTGCTTTAGA 13986 Query 1874 TATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTTTAGGG 1933 || || || | ||||| |||||||| ||||||||| ||| | || |||| |||| Sbjct 13987 TAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTA 14046 Query 1934 CTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTT 1993 | | ||||||||| || || | ||||| || || || ||||| || ||||| |||| Sbjct 14047 TTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTC 14106 Query 1994 TTGCCTATTCTGCTTGGGCCTTCAATAACAATTGATATGGGTC-TATCTGGCCGCGCAGC 2052 || ||| |||| || ||||| ||||| |||||| | |||||||||||| Sbjct 14107 TTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGC 14166 Query 2053 GGAATCCATGACATTTTCAGCGGCCCAG 2080 || |||| | ||||||||||| |||||| Sbjct 14167 GGCATCCCTAACATTTTCAGCTGCCCAG 14194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8953481631555