Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_023034.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq19028 219 7e-54 >seq19028 Length=31091 Score = 219 bits (242), Expect = 7e-54 Identities = 291/400 (73%), Gaps = 3/400 (1%) Strand=Plus/Plus Query 1623 GCATTCTTTAAAGCCCAGTTTTTAAGTGCGAAATTCTTTTCTTCATCCAAGAACTCTTTA 1682 ||||| | |||| ||| ||||| | | | ||| ||||| || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1683 TAACTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1742 || || || | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1743 ACTGGCTTCCCGTATTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCTTT 1801 || ||| | ||||||||| || | | | ||| | |||||||||||||| || ||||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1802 AAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCAGACATCATTACT 1861 |||||||||||| || || |||||||||| |||||||| |||||||||| ||| ||| Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033 Query 1862 GTAGACCTTTGGGCTAAGGTCTAAATGACCACACAGATAATTATGTGGGCCCAGAGACCT 1921 || | || | | ||||||||||| || || ||||||||||| || | ||| || Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093 Query 1922 GGCCCACATCGTCTTCCCAGTACGACTATCACCCCTCATGACTATACTTACAGGTC-TCA 1980 |||||| |||||||| || | | |||||| ||||| ||||| |||| | | Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153 Query 1981 AAGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCA 2020 | ||||||||||||||| || || ||||| ||||| Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA 14193 Score = 138 bits (152), Expect = 2e-29 Identities = 247/360 (69%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 969 GAATCACACTGAGAATGCATTGATGTTGTATATGGCGTGTACTCACGCCTCTAACCCTGT 1028 || ||| ||||| ||||||||| |||||||| | ||||| || ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1029 GTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAATATT 1088 ||| ||| ||| | ||| | ||||| ||||| ||||| |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1089 GAATTTTATTGAATATGTTTGATCTACATATACAACGTGATGTAATACATTCCATAATAC 1148 |||||||||| || || | ||||| || || | | |||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1149 ATGATCAACTGCTCTATTTACATTGTTAATACTGATAACTCCTAAATTATTTAAATACTT 1208 || || || |||||| | | |||||||||||| ||||| ||||| | |||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1209 AAGCACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCA 1268 | || | |||||||| ||||||||| |||||||| || | ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1269 GATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAA 1328 ||| | || |||||| |||||| | || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8720060514868