Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_023312.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq19028 464 1e-127 >seq19028 Length=31091 Score = 464 bits (514), Expect = 1e-127 Identities = 704/994 (71%), Gaps = 26/994 (3%) Strand=Plus/Plus Query 1606 TGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTTTC 1665 ||||| |||| ||| ||||| | |||| ||||| ||| | | ||| ||||| Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1666 TTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGG 1725 || || | ||||||||||||||||||| | || || |||||||| | |||||| | || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1726 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTG-CCAGTCCCTTT 1784 || ||||| || || | || ||| ||||||||||| || | | | ||| | |||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTT 13954 Query 1785 GGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGGTCGACGTCATCAATGACGT 1844 |||||||||| || ||||||||||| |||||||||||||| ||||||| |||||||| || Sbjct 13955 GGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGT 14014 Query 1845 TATACGAGGCATCATTGCTGTACACTTTAGGGCTAAGGTCTAAGTGACCACATAGGTAGT 1904 ||||| |||||| ||| || | |||| | | ||||| ||||| |||||||| | Sbjct 14015 TATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAAT 14074 Query 1905 TATGTGGACCCAACGACCTAGCCCACATGGTCTTCCCGGTTCGACTATCACCCTCAATCA 1964 ||||||| || || || || |||||| |||||||| |||| | ||||||||||| | Sbjct 14075 TATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGA 14134 Query 1965 CAATACTCATGGG-CCTCAAAGGCCGCGCAGCGGCACCCACCACGTTCACAGAAGCCCAT 2023 |||||||| |||| | | || ||||||||||||||| || || || ||| ||||| Sbjct 14135 CAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAG 14194 Query 2024 TCCTCAAGTTCATCAGGAACTTGATTAAAAGATGAAGACAAAAAGGGAGAAACATAAACC 2083 ||||| ||| || || || ||| | ||| ||| ||||||| Sbjct 14195 CACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGT 14240 Query 2084 TCCACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATA 2143 || ||| || | || || | |||||| || || ||||||||||||||| | | Sbjct 14241 TCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGA 14300 Query 2144 AAATCTTTTGGGAGTTTTTCCCTTATTATTGATAAAGCCTCTTCAGCCGAACCTGCATTT 2203 || | | ||| | |||||| || || || || | || |||||| || ||| || Sbjct 14301 AACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTT 14360 Query 2204 AGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCG 2263 | || ||||| | | ||||||| | ||| ||| |||||||| |||||||| ||||||| Sbjct 14361 AACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCG 14420 Query 2264 ATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCG 2323 || ||||| | ||||||||| ||||||||| ||| ||| ||||||| ||| ||||| Sbjct 14421 ATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCT 14480 Query 2324 GAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTGGGAGGAGTTATTAGGGTGAGTG 2383 || || || || ||||||||||||||| || || | ||||||| || || Sbjct 14481 GAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATG 14540 Query 2384 ACATCGAAATGTCTGGGGTTTCTGAACTTGGCTTTACCTTTGAACTGGATGAGGGCGTGG 2443 | |||||| ||||| |||||||| || | || || |||| ||| || || ||||| ||| Sbjct 14541 ATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGG 14600 Query 2444 ATATGCAGAGACCCATCTTGGGTGTTTTTCTTGTGACACTCTGATAAATAATTTATCAGA 2503 |||| | |||||| | ||||||||||||| | ||||| ||| | ||||| || Sbjct 14601 CTATGAAATTCCCCATCCT-GGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGA 14657 Query 2504 TAGGGCAATTTATTGACTGGAAGAATT--TCGAGCATGTGCTCTTTGGGTATGTGGCATT 2561 ||| ||| | ||| || | || | || || ||||| || | | |||| Sbjct 14658 -AGGACAAGAAA---CCTGTTTCAAGTGCTCTAAGATTTGATCTTTAGGAAGAGGACATT 14713 Query 2562 TTGGATAAGTGAGGAAAATATTTTTGGCATTTAC 2595 ||||| | || || || || ||||| | |||||| Sbjct 14714 TTGGAAATGTAAGAAATATGTTTTTAGAATTTAC 14747 Score = 141 bits (156), Expect = 2e-30 Identities = 262/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 971 GAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAACCCTGT 1030 || ||||||||| ||||| |||| ||||||| | |||||||| ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1031 GTATGCTACATTGAAGATACGTATCTATTTCTATGATTCAGTATCGAATTAATAAAGATT 1090 ||| ||| ||| | ||| | ||||| ||||| ||||| |||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1091 ATATTTTATTGAATATGATTGGTTTACATATACAACGTGATCTAATACATTCCATAATAC 1150 |||||||| || ||| ||||| || || || | |||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1151 ATGATCAACTGCTCTATTTACATTGTTAATACTAATTACAGCAAAATTATTAAGCACTTT 1210 || || || |||||| | | ||||||||||||||| ||| | || | | | ||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1211 GAATACTTGGGTTTTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCA 1270 | ||| | ||||||||| ||||||||| ||| |||| |||| |||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1271 GATTCGGTAGGTTAGAAAACATTTGTGCATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1330 ||| | || | || ||| |||||| | || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Query 1331 CCGTATCTGCACTGTGATGATGTC 1354 || || || | | ||| ||||| Sbjct 13437 TCGAATTTGTATTTCGATTATGTC 13460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8723259363186