Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_023849.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq19028 224 2e-55 >seq19028 Length=31091 Score = 224 bits (248), Expect = 2e-55 Identities = 567/851 (67%), Gaps = 31/851 (4%) Strand=Plus/Plus Query 1603 TGATGGTGACGAAGAGCGCATTTTTTAATGCCCAATCTTTTAGTGCTGCATTCTTTTCCT 1662 |||||||| ||| ||||| | || | ||||| ||||| | ||| ||||||| Sbjct 13778 TGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCT 13837 Query 1663 CGTTAAGATATTCTTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAA 1722 | | || | |||||||| ||| || || || |||||||| | |||||| || || | Sbjct 13838 CCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTA 13897 Query 1723 TTCCACCTTTAATTTGAATGGGTTTCCCATATTTCGTGTTGCTTTGCCAGTCTCTCTGGG 1782 | ||||| || || | | || | || ||||| ||||| ||| | || |||| Sbjct 13898 TCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGG 13957 Query 1783 CCCCCATAAATTCCTTGAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTAT 1842 |||||||||| || || |||||||||||||| || ||||| |||| |||||||| ||||| Sbjct 13958 CCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTAT 14017 Query 1843 ACCAAGCATTATTGCTATATACTCTTGGGCTGAGATCGAGATGCCCACATAAATAATTAT 1902 |||| |||||||| ||| | | | | | ||| | ||| || |||| ||||||| Sbjct 14018 ACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTAT 14077 Query 1903 GTGGCCCTAATGACCTAGCCCACATTGTTTTACCTGTTCGACTATGCCCTTCAATTACAA 1962 |||| ||||| || || |||||| ||| || ||||||| | | || ||||| |||| Sbjct 14078 GTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAA 14137 Query 1963 TTGATTTAGGTC--TAATAGGCCGCGCAGCGGGACTCATTACATTTTCGGAAACCCAACA 2020 | || |||| |||| ||||||||||||| | | | |||||||| | |||| || Sbjct 14138 TACTCTTGGGTCGTTAAT-GGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCA 14196 Query 2021 CTCAATTTCATCTGGGACTAGATCAAACGACGAAGATAGAAAAGGATTTTTAAAAACCTC 2080 ||||||| | || || ||| | ||||||| | | || || Sbjct 14197 CTCAATT--------------GTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTC 14242 Query 2081 -GGAACGAGTAGGAAAAATTCTATCTAAATTACTATTTAGATTATGAAACTGTAAAATAT 2139 ||| | | | | || |||| |||||| || | || ||||||| | || ||||| Sbjct 14243 AGGAGGGGGCATG-AATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAG 14299 Query 2140 AATCTTTG--GGCTCTAATTCCTTAATTACATTAAGAGCCTC-TGACTTACTGCCAGAGT 2196 || ||||| ||| | ||| |||| | | ||| || || | | || || | | Sbjct 14300 AAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACT 14359 Query 2197 TAAGCGCCTTGGCGTAAGCATCATTGGCTGATTGTTTTCCCCCTCGTGCAGATCGTCCGT 2256 ||| ||| | || | ||||||| | || ||| || |||| ||||||||||| | Sbjct 14360 TAA-CGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCAT 14418 Query 2257 CGATCTGAAACTCTCCCCATTCGACGGTGTCTCCGTCCTTCTCCATATATGACTTGACAT 2316 |||| ||||| | ||||| ||| | || | ||| ||| | || ||| ||| |||| Sbjct 14419 CGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACAT 14478 Query 2317 CGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTAGT-TGGGGA- 2374 | || ||||||||| || | ||| || ||| ||||| || ||||| | ||| Sbjct 14479 CTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG--CTAGTATTAGGAT 14535 Query 2375 -GACCAAATCGAAGAATCGCTGATTCTTGCACTGGAATTTCCCTTCGAATTGAATGAGAA 2433 || | ||||||| || | || | | || || |||||||||||||| || Sbjct 14536 GGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGG 14595 Query 2434 CGTGGAGATGA 2444 | ||| |||| Sbjct 14596 CATGGCTATGA 14606 Score = 143 bits (158), Expect = 5e-31 Identities = 268/388 (69%), Gaps = 17/388 (4%) Strand=Plus/Plus Query 967 CATACTGAAAACGCTATGTTATTGTATATGGCATGTACTCATGCTAGCAATCCTGTGTAT 1026 ||||||||||| || |||| |||||| | |||||||| |||||||| ||| Sbjct 13084 CATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1027 GCAACATTGAAAATTAGAATCTATTTCTATGATTCGCT-TCAGAATTAATAAACATTGAA 1085 || ||| || | | ||||| ||||| | ||| |||||||||| |||||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTGAA 13199 Query 1086 TTTTATT-----ATAGTCGAAAGTTGTACATCAATAGTCTTGTCCAATACATTATTCATT 1140 ||||||| ||| || | ||||||| | || | || | |||||| | | Sbjct 13200 TTTTATTTCATGATATTCAA-----GTACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1141 ACATGATTAACCGCCCTAATTACATTGTTAATACTAACAATCCCTAAATTGTTCAAATGT 1200 |||| | || || ||||| | |||||||||||||| || ||||| || ||| | Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1201 TTCA-TACATTGAACCCTAAATACTCTTAAGAAACGCCCAGTCTGAGGTTGTAAATGAGT 1259 |||| |||| ||| ||||||||||||||||| ||| |||| ||||| |||| Sbjct 13315 TTCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Query 1260 CCAGATCTGGAAGATCAGAAAACACTGGTGAAGTCCCAACGCTTTCCTCAGGTTGTGGTT 1319 || ||||| |||| | || ||| | |||||| || | ||||||||||||||||| Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433 Query 1320 GAATTGGATTTGGATCGTGATAATGTCG 1347 |||| | ||||| || ||| |||||| Sbjct 13434 GAATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8601703127102