Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024012.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq19028 141 2e-30 >seq19028 Length=31091 Score = 141 bits (156), Expect = 2e-30 Identities = 248/356 (70%), Gaps = 14/356 (4%) Strand=Plus/Plus Query 1499 TTTTCCTCTTTGTCTAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAGAGCACG 1558 |||||||| | | ||||| ||||||||||||| | |||||||||||| | | | Sbjct 13831 TTTTCCTCCTCG---AGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1559 ATTGCTGGGATGCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTG--CC 1616 |||| || || || || || || | || ||| |||||||||| | ||| ||| || Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTT-TACCTTG-CTGGACC 13945 Query 1617 AGtttttttGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGA 1676 | || |||||||||||| || ||||| ||| |||||||||| ||||| ||| Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGT------GCTTTAGATAATGCGGATCGA 13999 Query 1677 CGTCATCAATGACGTTATACTCCACGTCGTTTGAGTAGACCCGGTGATTGAAGTCTAAGT 1736 ||| |||||||| ||||||| | | ||||| || | | ||| || ||||| | Sbjct 14000 CGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAAT 14059 Query 1737 GTCCACTGAGATAGTTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCGTG 1796 | || | || || |||||||| ||||| | | |||||| ||||||||||| | | Sbjct 14060 GACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAG 14119 Query 1797 AATCACCTTCGACTATGACACTTATAGGTC-TCTCCGGCCGCGCAGCGGAACCCCT 1851 | ||||| || | | | ||| | |||| | ||||||||||||| | |||| Sbjct 14120 ACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCT 14175 Score = 77.0 bits (84), Expect = 5e-11 Identities = 93/127 (73%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 849 TTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGA 908 || |||||||| | |||||||| ||||| || || ||| ||| ||| | || Sbjct 13099 TTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATATTGTACTATGAGAACACGC 13158 Query 909 ATCTATTTTTATGATTCGGTCACCAATTAATAAATATTGAATTTTATTGAGTGATTTTCC 968 | ||||||||||| || | |||||||||||||||||||||||| |||| ||| Sbjct 13159 AGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAATTTTATTTCATGATATTCA 13218 Query 969 AGTACAT 975 ||||||| Sbjct 13219 AGTACAT 13225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8240233267168