Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024116.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq19028 450 2e-123 >seq19028 Length=31091 Score = 450 bits (498), Expect = 2e-123 Identities = 688/971 (71%), Gaps = 21/971 (2%) Strand=Plus/Plus Query 1620 GCATTCTTTAAAGTCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTA 1679 ||||| | |||| |||||| || | | | ||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1680 TAACTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1739 || |||||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1740 ACTGGCTTTCCGTACTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAATTCCTT 1798 || ||| ||||||| ||| || | | | ||| | |||||||||||||| || || || Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1799 AAAGTGCTTTAGGTAATGGGGATCTACGTCATCGATGACGTTATACCAGGCATCATTATT 1858 |||||||||||| ||||| ||||| |||| ||| |||| |||||||||||||| ||| Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033 Query 1859 GTAGACCTTTGGGCTAAGGTCTAGATGTCCACACAAATAATTATGTGGTCCGAGTGATCT 1918 || | || | | |||| ||| || || | |||||||||||||| | ||||| Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093 Query 1919 TGCCCACATGGTCTTGCCCGTTCTACTATCACCCTCTATGACAATACTTATGGG-CCTCA 1977 ||||||| ||||| || |||||| |||||||| ||||||||||| |||| | | | Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153 Query 1978 AAGGCCGCGCAGCGGCACCGAGAACATTCTCGGCAGCCCACTCTTGAAGTTCCTCGGGAA 2037 | ||||||||||||||| | |||||| || || ||||| | | ||| || Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCA-----GCA----CTC---AA 14201 Query 2038 CTTGGTCAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCACAGGAGGTGTAAAAA 2097 | || || |||||| | ||||||| ||||||| || ||| || | || | Sbjct 14202 --TTGTTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATA 14259 Query 2098 TCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTT 2157 | | |||||| || || ||||||||||||||| | ||| | | ||| | ||||| Sbjct 14260 TTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTT 14319 Query 2158 CCCTTATTATTGATAAAGCCTCTTCAGCCGAACCTGCATTTAGGGCCTCTGCTGCTGCAT 2217 | || || || || | || |||||| || ||| ||| || ||||| | | ||| Sbjct 14320 CTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACAT 14379 Query 2218 CATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTGACCCCAGT 2277 |||| | ||| ||| |||||||| |||||||| ||||||||| ||||| | ||||||| Sbjct 14380 CATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGT 14439 Query 2278 CGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTTGCTCCCT 2337 || ||||||||| ||| ||| ||||||| ||| ||||| || || || || | Sbjct 14440 CGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATT 14499 Query 2338 GGAAGTTTGGGTGGAATTGGGAGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGT 2397 |||||||||||||| || || | ||||||| || ||| |||||| ||||| |||| Sbjct 14500 GGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGT 14559 Query 2398 TTCTGAACTTGGCTTTACCTTTGAACTGGATGAGGGCGTGGATATGCAGAGACCCATCTT 2457 |||| || | || || |||| ||| || || ||||| ||| |||| | |||||| | Sbjct 14560 TTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCT 14619 Query 2458 GGTGTTTTTCTTGTGACACTCTGATAAATAATTTATCAGATGGGCATTTTA-TTGACTGA 2516 ||||||||||||| | ||||| ||| | ||||| || || || | || | | Sbjct 14620 GGTGTTTTTCTTGACAGACTCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTCA 14677 Query 2517 AGAATTTCGAGCATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTGAGGAAAATATTT 2576 || || | ||||| ||||| || | || ||||||||| | || || || || ||| Sbjct 14678 AG-TGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTT 14736 Query 2577 TTGGCATTTAC 2587 || | |||||| Sbjct 14737 TTAGAATTTAC 14747 Score = 199 bits (220), Expect = 7e-48 Identities = 273/381 (72%), Gaps = 3/381 (1%) Strand=Plus/Plus Query 970 CATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTAT 1029 |||||||| ||||| |||| ||||||| | |||||||| |||||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1030 GCAACTATGAAAATACGCATCTATTTCTATGATTCAATATCAAATTAATAAAATTTATAT 1089 ||||||| || ||||| ||||| ||||| ||||||||||||||| || || Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1090 TTTATATCATGACTTTCGGTTACATTTATTGTGTTTTCAAGTACATCATACAATACATGA 1149 ||||| |||||| ||| ||||| | ||| | |||| ||||| | ||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1150 TCAACCGATCTAATTACAGTGTTAATACTGATAACTCCTAAGTTATCTAAATACTTAAGA 1209 || || | |||||| | | |||||||||| ||||| ||||| |||||| | || | Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1210 ACTTGATATCTAAATACTCTTAAGAAACGACCAGTCTGAGGCTGTAATGTCGTCCAAATT 1269 || || || ||||||||||||||||| ||| |||| |||| |||| || Sbjct 13321 ACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATC 13380 Query 1270 CGGAAGTTGAGAAAACATTTGTGAATCCCCAATTCCTTCCTGATATTGTGGTTGAATCTT 1329 ||||||||| ||| |||||||| || ||||||||| | ||||||||||||| Sbjct 13381 TTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGA 13440 Query 1330 ATCTGAATTGAAATGATGTCG 1350 || || ||| || |||||| Sbjct 13441 ATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8697668576642