Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024117.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq19028 269 5e-69 >seq19028 Length=31091 Score = 269 bits (298), Expect = 5e-69 Identities = 597/892 (67%), Gaps = 31/892 (3%) Strand=Plus/Plus Query 1721 CCTGGATTGCAGAGGAAGATTGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTAT 1780 || |||||||| | ||||||||| || || ||||| || || | || ||| |||||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1781 TT-ACAGT--TGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGG 1837 || || | |||| ||| | |||||||||||||| || || |||||||||||||| Sbjct 13930 TTTACCTTGCTGGA---CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGA 13986 Query 1838 TATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTATACTTTTGGA 1897 || || || ||||||| |||||||| ||| ||||| ||| | || || | ||| | Sbjct 13987 TAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTA 14046 Query 1898 CTTAAGTCTAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTGTT 1957 | || ||||||||||| || || ||||||||||||||||||||||| ||||| |||| Sbjct 14047 TTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTC 14106 Query 1958 TTACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGG-CCTATCTGGCCGCGTAGC 2016 || ||| ||||| || || || |||||||| |||| | | |||||||| ||| Sbjct 14107 TTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGC 14166 Query 2017 GGCATCCATGACATTTTCAGCAGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGA 2076 ||||||| | ||||||||||| |||| | | || | ||| ||||| || Sbjct 14167 GGCATCCCTAACATTTTCAGCTGCCC-AGCACTCA-------------ATTGTTGAAGGA 14212 Query 2077 AGAAAGAGAAAAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTATCTAAATT 2136 |||| | ||||||| || | |||||| || Sbjct 14213 AGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTT 14272 Query 2137 ATTATTAATATTATGGAATTGAAGAACAAAGTCTTTTGGACACAATTCCTTTATTATCTG 2196 | |||||||| |||||| | ||| | | ||| || || || || || | Sbjct 14273 TGGAACTATATTATGATATTGAAATAGAAACTTTGCTGG-CATTTTTTCTCTAATAATAG 14331 Query 2197 TAA-CGCTTCAGATTTACACCCAGTATTTAATGCCTGGGCGTAAGCATCGTTAGCCGTTT 2255 || |||||| | | || | |||| || | || | |||| || | || | Sbjct 14332 AAAGCGCTTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTAT 14391 Query 2256 GCTGACCTCCTCTAGCACTTCTTCCGTCGACCTGGAAGACTCCACTGTCAACAAAATCTT 2315 | ||||||||||||| || ||| |||| || || || | ||| |||| Sbjct 14392 GTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCAC 14451 Query 2316 GGTCCTTCTCAATGTAGGCCTTGACATCGGAAGAGGACTTTGCTGATTGGAAATTGGGGT 2375 ||| ||| | ||||| ||| ||||| ||||| || || || |||||||| || |||| Sbjct 14452 AGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGT 14511 Query 2376 GGTATTGTGTAG--AGGAGTTGGGATGAGTAAGGTCGAAGTGCCTGGGGTTTGTGAATTG 2433 |||| |||| | || | || ||||| | | |||||||| || |||||| | ||||| Sbjct 14512 GGTA-TGTGGTGCTAGTA-TTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTG 14569 Query 2434 GCACTTACCTTTGAATTGGATGAGAGCATGGAGGTGCAGGCTCCCATCCTGGTGTTTCTC 2493 ||| |||| |||||| || || |||||| || | ||||||||||||||| || Sbjct 14570 TGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTC 14629 Query 2494 TTGAGCAACTCGGATAAATAATTTATCAGAAGGGCATTGAATGCCCTTT-AATAGCTCAA 2552 |||| |||| ||| | ||||| ||||| || ||| | ||| || |||| | Sbjct 14630 TTGACAGACTC--TAAAACAGTTTATTTGAAGGACA-AGAAACCTGTTTCAAGTGCTCTA 14686 Query 2553 GGACTGTGTCTTTAGATAGGGGGCATTTTGGGTAAGTGAGGAATATATTTTT 2604 || | ||||||| || || |||||||| | || || ||||| ||||| Sbjct 14687 AGATTTGATCTTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTTT 14738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8796739723750