Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024304.1 Length=2602 Score E Sequences producing significant alignments: (Bits) Value seq19028 156 7e-35 >seq19028 Length=31091 Score = 156 bits (172), Expect = 7e-35 Identities = 221/310 (71%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 1546 CCTGGATTGCACAGCACAATTGATGGGATGCCTCCTTTAATTTGAACTGGCTTTCCGTAT 1605 || |||||||||| | |||| || || || || || || | || ||| |||||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1606 TTGCAGTTGGATTGCCAGTCCTTTTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTT 1665 || ||| ||| | |||||||||| || |||||||| |||| |||| Sbjct 13930 TTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTG------CTTT 13983 Query 1666 AGATAATGCGGGCTGACATCATCTATGACATTATATTCAGCTTTATTTGAATAAACTCTG 1725 ||||||||||| ||| | ||| |||| ||||| || ||||||||||||| | | Sbjct 13984 AGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTA 14043 Query 1726 GAATTAAAATCAAGATGTCCGCTCAAATAATTATGTGGGCCTAATGCTCGAGCCCACATC 1785 ||| ||||| | ||| |||| | ||||||||||| ||||| | || |||||| Sbjct 14044 TTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCT 14103 Query 1786 GTCTTCCCCGTTCGACTATCACCTTCAATGATAATACTAATAGGTC-TCTCTGGCCGCGC 1844 |||||||| |||| | ||||| ||||||| |||||| | |||| | ||||||||| Sbjct 14104 GTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGC 14163 Query 1845 AGCGGAATCC 1854 ||||| |||| Sbjct 14164 AGCGGCATCC 14173 Score = 120 bits (132), Expect = 5e-24 Identities = 356/544 (65%), Gaps = 55/544 (10%) Strand=Plus/Plus Query 835 TCATACTGAGAACGCCTTATTGTTGTATATGGCATGTACTCATGCTTCTAATCCCGTGTA 894 ||||||||| || || |||||||||||| | |||||||| |||||||| || || Sbjct 13083 TCATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 895 TGCTACATTGAAAATTCGGATCTATTTTTATGAT--TCGATCAGTAATTAATAAAGTTTG 952 | ||| ||| || || | ||||||||||| | |||| |||||||||| ||| Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA--AATTAATAAATATTG 13197 Query 953 AATTTTATTGAATGATCTTCGAGTACAT----AATTTAC---ATAAGATCTGTCTGTCGC 1005 ||||||||| ||||| ||| ||||||| ||| | || | || || | | Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACAT-TGAATAATAC 13256 Query 1006 GGAGCGAACAGCTCTAATTACATTGTTAATTGAAATAACACCTAATTGATCTAGATATAA 1065 | ||||||||||| | ||||||||| ||||||||||||| | |||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1066 CAAAACTAAATATTTAAAT-CTATTTAAA-----TATGTCGTCCCAGAAGCTGTCAGAGA 1119 || || | |||||||| || || | | ||||||| || | || | Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCG-----GAGGACGT----AA 13367 Query 1120 ACTCGTCCAGACTTGGAAATTGAGAAATGCCTTGTGGAGATCCAACGCTTTCCTCGCGTT 1179 || |||| || | ||| ||||| || || ||||| |||| || | |||||| ||| Sbjct 13368 ACGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTT 13427 Query 1180 GTGGTTGAACCGAATCTGGATGTGGTAAATCCTGGTGTTGGTGTATGGTGGATCCTCCAC 1239 ||||||||| ||||| || || | | || ||| | | | || ||| || | Sbjct 13428 GTGGTTGAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGG-TCTGAGAT 13486 Query 1240 GTTGGTT----ATCTTGAAATAAAG-GGGATTTGATATTTCCCAAATA------------ 1282 ||||| ||||||||||| || | | |||||||||||||| Sbjct 13487 TGTGGTTGAGGATCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGT 13546 Query 1283 -------TATACGCCATTCTCTGCTTGAGGCACAGTGATGAGTTCCCCTGTGCGTGAATC 1335 || ||||||||| ||||| | |||||||| ||||||||||||| ||| Sbjct 13547 AAACGACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATC 13606 Query 1336 CATG 1339 |||| Sbjct 13607 CATG 13610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8214642480624