Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024491.1 Length=2778 Score E Sequences producing significant alignments: (Bits) Value seq19028 298 1e-77 >seq19028 Length=31091 Score = 298 bits (330), Expect = 1e-77 Identities = 654/969 (67%), Gaps = 31/969 (3%) Strand=Plus/Plus Query 1646 GCATTCTTTATAGCCCAATTTTTTAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTA 1705 ||||| | | || ||||||||||| | ||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1706 TAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTTGGAATCCCGCCTTTAATTTGA 1765 |||||||| | || || |||||||| | |||||| || || ||||| || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1766 ACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTA 1825 || ||| |||||||||| ||||| ||| | |||||||||||||| || || ||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTA 13974 Query 1826 AAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTG 1885 ||||||||||| || || |||||||||| |||||||| ||| |||||||||| ||| Sbjct 13975 AAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAA 14034 Query 1886 TAGATCTTTGGGCTTAAGTCCAGATGACCACACAGATAATTATGTGGACCCAGTGACCTA 1945 || || || | || || | |||||| || || ||||||||||| || | || || Sbjct 14035 TAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTT 14094 Query 1946 GCCCACATCGTCTTCCCTGTCCGACTGTCACCCTCAATCACTATACTTATGGG-CCTGAA 2004 |||||| ||||||||||| | | ||||||||||| || ||||| |||| | | || Sbjct 14095 GCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAA 14154 Query 2005 AGGCCGCGCAGCGGCACTGACAACATTCTCGGCAGCCCATTCCTCAAGTTCTTCAGGAAC 2064 ||||||||||||||| |||||| || || ||||| ||||| | | ||||| Sbjct 14155 TGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAATTGTTGAAGGAA- 14213 Query 2065 TTGATCAAATGAAGNNNNNNNNNNNNNNNNNACATAAACCTCCATTGGAGGTGTAAAAAT 2124 || ||| | || |||||| || || || | || || Sbjct 14214 --GAACAACTAAA-----------AGGACTAACATAAGGTTCAGGAGGGGGCATGAATAT 14260 Query 2125 CCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACAAAATCTTTG--GGAGCTAAC 2182 | |||||| || | | || ||||||| |||| ||| | || ||||| || | Sbjct 14261 TCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAAACTTTGCTGGCATTTTT 14318 Query 2183 TCCCTTATGACATTAAGAGCCTC-TGACTTACTGCCTGCGTTAAGTGCCTTGGCGTAAGC 2241 || || || | | ||| || || | | || || || | | || | || | | Sbjct 14319 TCTCTAATAATAGAAAGCGCTTCTTCAATTGATG-TAGCACTTAACGCTTCTGCAGATAC 14377 Query 2242 GTCATTGGCTGACTGTTGCCCTCCTCTTGCAGATCGTCCATCGATCTGAAACTCACCCCA 2301 ||||| | || ||| |||||||| ||||||||||||||||| ||||| | ||||| Sbjct 14378 ATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCA 14437 Query 2302 CTCAGTGGTGTCTCCGTCCTTGTCGATGTATTGTTTAACATCTGAGCTGGACTTAGCGCC 2361 || ||| || | ||| || ||||||||| ||||||||||| || |||||| Sbjct 14438 GTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGA 14497 Query 2362 TTGTATGTTGGGGTGGAAACTGGTGCTACAGCTTGGGTGTACAATATCGAA-TGTGCGGT 2420 ||| | ||| |||||| | |||||||| | || || | |||||||| ||| | Sbjct 14498 TTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGG 14557 Query 2421 TGTTGGTGATTGTGAGCTTTCCTTCGAATTGTAACAAAGCATGCAGATGAGGTTCCCCAT 2480 || |||||| ||| ||||||||||| | | ||||| |||| |||||||| Sbjct 14558 GTTTCTAAATTGTG-CCTTGCCTTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCAT 14616 Query 2481 TTTGATGGAGTTCTCTGCAAATTTTAATGTATTTAATGTTAGAAGGTAGAGAGAGGTTTT 2540 || || |||| || | | ||| | || | || ||||| ||| | | || Sbjct 14617 CCTGGTGTTTTTCTTGACAGACTCTAAAACAGTT--TATTTGAAGGACAAGAAACCTGTT 14674 Query 2541 GGAAATGTTGTAGAAGGGTT--TCTTTGGAGAGAGAGCATTTGGGAAAGGTTAAGAAA-A 2597 || || | | ||| || ||||| | |||| ||||| ||||| | ||||||| | Sbjct 14675 TCAAGTGCTCT--AAGATTTGATCTTTAGGAAGAGGACATTTTGGAAATG-TAAGAAATA 14731 Query 2598 TGTTTTTAG 2606 ||||||||| Sbjct 14732 TGTTTTTAG 14740 Score = 138 bits (152), Expect = 2e-29 Identities = 247/360 (69%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 992 GAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCATGCCTCTAATCCTGT 1051 || ||||||||| ||||||||| |||||||| | || ||||| ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1052 ATATGCTACATTGAAGATACGGATCTATTTCTATGATTCAGTATCGAATTAATAAATATT 1111 |||| ||| ||| | ||| | ||||| ||||| ||||| |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1112 GAATTTTATTGAATATGATTGTTTTACATTTACAACATGATCTAATACATTCCATAGTAC 1171 |||||||||| || ||| ||||| || || || | |||||| ||| ||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1172 ATGATTAACTGCTCTATTTACATTATTAATACTGACAACTCCTAAATTATTTAAATACTT 1231 || | || |||||| | | ||| |||||||| | ||| ||||| | |||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1232 AAGCACTTGGGTCTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCA 1291 | || | |||||||| ||||||||| |||||||| || | ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1292 GATTCGGTAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1351 ||| | || |||||| |||||| | || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8774348022635