Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024687.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq19028 284 2e-73 >seq19028 Length=31091 Score = 284 bits (314), Expect = 2e-73 Identities = 318/424 (75%), Gaps = 1/424 (0%) Strand=Plus/Plus Query 1619 TGGCTCTGTGAGGGTGATGAATGTTGCATTGTGTATAGCCCAAGACTTCAGTGCTGAGTT 1678 ||| | ||||| |||| |||| |||||| || | || |||| || | | || Sbjct 13770 TGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATT 13829 Query 1679 CTTTTCCTCATCGAGGAACTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGAT 1738 |||||||| |||||||||||||||||||||||| | || ||||||||||| | |||||| Sbjct 13830 TTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGAT 13889 Query 1739 CGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTACTTTGCCAGTC 1798 || || || || || || || | || ||| | ||||| || || || ||| | Sbjct 13890 TGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATT 13949 Query 1799 CCTCTGGGCCCCCATGATTTCTTTAAAGTGCTTTAGGTAGTTGGGGTCTACGTCATCAAT 1858 || ||||||||||| | ||||||||||||||||| || | || || |||| |||||| Sbjct 13950 GCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAAT 14009 Query 1859 GACGTTGTACCATGCATCATTTGAATAGATCTTAGGGCTCAGATCTAAATGGCCACATAG 1918 || ||| ||||| |||| ||||||||| || ||| ||| ||||||||| || ||||| Sbjct 14010 GATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAG 14069 Query 1919 GTAATTATGTGGACCCAGTGACCTAGCCCACATTGTTTTCCCCGTACGCCTATCACCCTC 1978 |||||||||||| || | || || |||||| ||| ||||| || | |||||||| Sbjct 14070 GTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129 Query 1979 AATGACGATACTTTTAGGTC-TCAATGGCCGCGCAGCGGGACCCATCACATTATCAGAGG 2037 |||||| ||||| || |||| | |||||||||||||||| | || | ||||| |||| | Sbjct 14130 AATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTG 14189 Query 2038 CCCA 2041 |||| Sbjct 14190 CCCA 14193 Score = 100 bits (110), Expect = 5e-18 Identities = 251/385 (65%), Gaps = 29/385 (8%) Strand=Plus/Plus Query 963 GAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGT 1022 || ||||||||| ||||||||| |||||||| | || || || ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1023 GTATGCCACACTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAAATTT 1082 ||| || ||| | ||| | ||||||||||| ||||| |||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAA---- 13192 Query 1083 ANNNNNNNNNNNNNNNNNNNNATTGAATTTTA-TTGAAGATGATTGTTTTACATATACAA 1141 ||||||||||| || | ||| ||| ||||| || Sbjct 13193 --------------------TATTGAATTTTATTTCATGAT-ATTCAAGTACATCCACTG 13231 Query 1142 TATGCTCTAATACATTCCATAATACATGATCAACTGCTCTAATTACTTTGTTAATACTGA 1201 | ||||| | |||||| ||||||||| || || |||||||| | ||||||||||| | Sbjct 13232 TTTGCTCAATTACATTGAATAATACATTGTCTACAGCTCTAATAATATTGTTAATACTAA 13291 Query 1202 TAACTCCTAGATTATCTAAATACTTAAGGACTTGTGTCTTAAAGACCCTTAAGAAACGAC 1261 |||| |||| |||||| | || | || | ||||| || ||||||||| Sbjct 13292 TAACACCTAATCGGTCTAAAAATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGT 13351 Query 1262 CAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATTCCCA 1321 |||||||| || | ||| ||| |||| |||||| |||||| | || Sbjct 13352 ATGTCGGAGGACGTAAACGAGTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCA 13411 Query 1322 ACGCTTTCCTCAGGTTGTGATTGAA 1346 | |||||||||||||| ||||| Sbjct 13412 GTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659282396826