Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024693.1 Length=2831 Score E Sequences producing significant alignments: (Bits) Value seq19028 214 3e-52 >seq19028 Length=31091 Score = 214 bits (236), Expect = 3e-52 Identities = 391/567 (69%), Gaps = 12/567 (2%) Strand=Plus/Plus Query 2177 TAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCTAATGC 2236 || ||||||||||||||| | ||| | | || | ||| || ||||| || | | || Sbjct 14279 TATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGC 14338 Query 2237 CGCCTCAGCAGATCCTGTGTTTAAGGCTTCTGCTGCTGCATCATTAGCCGTCTGCTGACC 2296 | ||| ||| | |||| |||||||| | | ||||||| | || || ||| Sbjct 14339 TTCTTCAATTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACC 14398 Query 2297 TCCTCTAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGTCGATATAATCTCCGTCCTT 2356 |||||||||||||| || |||| || || | ||||||||| | ||||| | ||| || Sbjct 14399 TCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTT 14458 Query 2357 CTCGATGTATGCCTTGACATCAGAAGAGGATTTAGCTCCCTGGAAATTGGGGTGGAATTG 2416 | |||||||| ||| ||||| ||||| |||||||| ||||| || |||||| || Sbjct 14459 CGCGATGTATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGT 14518 Query 2417 GGTGGAATTATGAGGGTGCACGAGGTCGAAGTGTCTGGGATTTCTGAACTGGGCTTTACC 2476 |||| | ||| ||| || | || ||||||||||| || ||||| || || || || || Sbjct 14519 GGTGCTAGTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCC 14578 Query 2477 CTTGAATTGGATAAGGGCATGGAGGTGCAGAGACCCATCTTGATGTTGCTCCTGAGCAAC 2536 | |||||| |||||||||||| || | |||||| || |||| || ||| || Sbjct 14579 TTCGAATTGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGAC 14638 Query 2537 TCTGATAAATAGTTTATCCGATGGGCACTGAATTTTGTGCAACAGGTCTAGGGCTTGCTC 2596 ||| ||| ||||||| || || || || | | ||| | |||| | ||| || Sbjct 14639 TCT--AAAACAGTTTATTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATC 14696 Query 2597 TTTATTTAAAGAGCATTTGGGATAAGTAAGGAAAATATTTTTAGCCTTAACTTGGAAACC 2656 |||| | || ||||| ||| | ||||| || || ||||||| || || ||||| Sbjct 14697 TTTAGGAAGAGGACATTTTGGAAATGTAAGAAATATGTTTTTAGAATTTACCTGGAA--- 14753 Query 2657 TGCTTGA---CGAGGCATTTTGCTGACGTATGCAATGGGTGCTCTCAAAACTCTACGGAA 2713 || ||| | ||||||||| || ||| ||||||| ||| | | ||| | | Sbjct 14754 TGAATGAAGCCTTGGCATTTTGTAGA--AATGAAATGGGTACTC-CGACTTCCTA-TGCA 14809 Query 2714 TGGGGGGCTTTGGGTGCTCATTTATAC 2740 | ||| |||||||| || | | ||||| Sbjct 14810 TTGGGTGCTTTGGGAGCCCTTATATAC 14836 Score = 183 bits (202), Expect = 5e-43 Identities = 241/329 (73%), Gaps = 9/329 (3%) Strand=Plus/Plus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 || |||||||| | |||||| || || || ||||| || || | || ||| | ||||| Sbjct 13870 CCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTAT 13929 Query 1815 TTTG---TGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCTTTAGG 1871 ||| || |||| ||| | || |||||||| || || ||||||||||||||||| Sbjct 13930 TTTACCTTGCTGGA---CCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGA 13986 Query 1872 TATTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTCTTGGA 1931 || || || ||||||| |||||||| ||| ||||| ||| | || || | | | | Sbjct 13987 TAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTA 14046 Query 1932 CTCAGGTCCAAGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAAACTGTT 1991 ||| || || || || || || ||||||||||| |||||||| | ||||| |||| Sbjct 14047 TTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTC 14106 Query 1992 TTACCTATTCT-GCTTGGCCCTTCAATAACAATACTAATGGG-CCTATCCGGCCGCGCAG 2049 || ||| |||| | | ||| ||||| |||||||| |||| | | |||||||||| Sbjct 14107 TTCCCTGTTCTAGACTCACCC-TCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAG 14165 Query 2050 CGGAATCCATGACATTTTCAGCGGCCCAG 2078 ||| |||| | ||||||||||| |||||| Sbjct 14166 CGGCATCCCTAACATTTTCAGCTGCCCAG 14194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8943885188220