Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024810.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq19028 351 2e-93 >seq19028 Length=31091 Score = 351 bits (388), Expect = 2e-93 Identities = 733/1080 (68%), Gaps = 29/1080 (3%) Strand=Plus/Plus Query 1574 GAGGGTGTAGAAGATGGCATTCTTGAGAGCCCAGGATTTTAGTGCGGAATTCTTGTCCTC 1633 || ||||||||| ||||| | | || ||| ||||| | ||| || ||||| Sbjct 13779 GATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTC 13838 Query 1634 ATCCAAGAATTCTTTATAGCTGCTCGAAGGACCAGGATTGCAGAGGAAGATAGTGGGTAT 1693 || | ||| |||||||||||| | ||||||||||||||| | |||||| || ||||| Sbjct 13839 CTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTAT 13898 Query 1694 ACCTCCTTTAATCATGACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCACGCTGGGC 1753 || || || ||| | || ||| ||||||||||| ||||| ||| | | ||||| Sbjct 13899 CCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGC 13958 Query 1754 CCCCATGAATTCTTTAAAGTGTTTCAAGTAGTGCGGGTCGACGTCGTCAATGACGTTGTA 1813 |||||| || ||||||||||| || | || ||||| ||||||| ||||||| ||| || Sbjct 13959 CCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATA 14018 Query 1814 CCAAGCATCGTTACTGTAGATCTTGGGGCTCAGGTCCAGATGGCCGCACAAGTAATTGTG 1873 ||| |||| || || || || ||| || | ||| ||||| | |||||| || Sbjct 14019 CCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATG 14078 Query 1874 CGGTCCTAAAGAACGTGCCCACATCGTCTTCCCCGTCCTACTATCACCCTCTAAAACAAT 1933 ||||||||||| | ||||||| |||||||| || ||| |||||||| | ||||| Sbjct 14079 TGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAAT 14138 Query 1934 AC-CTATGGGCCTCACTGGCCGCGCAGCGGAACACACAATATTTTCTGATGCCCAATCGA 1992 || || || | | | |||||||||||||| | | || |||||| | ||||| Sbjct 14139 ACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCC------ 14192 Query 1993 CGAGTTCTCTTGGGACGAGGTCGAAGGATTCCTTTGAAAATGGACAAACATATGTATC-- 2050 || ||| | || | |||| | || ||| |||| |||||| | || Sbjct 14193 --AGCACTCAATTGTTGAAG--GAAGAACAACT----AAAAGGACTAACATAAGGTTCAG 14244 Query 2051 GACCGGAGCTGCAAATATCCGGTCTAGATTCGTCTTGTAATTGTGGTACTGGAAGATGTA 2110 || || || ||||| || |||| || | ||| || || || || | | | Sbjct 14245 GAGGGGGCATG--AATATTCGATCTAATTTTGGAACTATATTATGATATTGAAATA-GAA 14301 Query 2111 ATCCTTC-GGGAGCTTTTCCCGAAGGATATTCATTGCTGCCTCCGTCGACCCAGAATTCA 2169 | | | || | ||||| | || ||| | ||| | || | || || | | | Sbjct 14302 ACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCACTTA 14361 Query 2170 GCGCCTCCGCTGCCGCATCATTAATTGTCTGCTGACCTCCTCTAGCAGATCGTCCATCGA 2229 ||| || || | ||||||| |||| || |||||||||||||||||||||||||| Sbjct 14362 ACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGA 14421 Query 2230 TCTGAAACTCACCCCAGTCGACGTAATCACCGTCCTTCTCGATATATGATTTGACGTCGG 2289 | ||||| | ||||||||| |||||||| ||| ||| |||| ||| || || || | Sbjct 14422 TTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTG 14481 Query 2290 AGCAGGACTTTGCTCCCTGGACGTTCGGGTGGAACTGGGTGGAGCTATGAGGGTGAACAA 2349 | | || || || |||| ||| |||||| | |||| ||| ||| || | | Sbjct 14482 AAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATTAGGATGGATGA 14541 Query 2350 CATCGAAGTGTCTGGGGTTTCTGAACTGGGCTTTACCTTTGAACTGGATAAGGGCGTGGA 2409 |||||||||||| |||||||| || || || || |||| ||| || |||||||| ||| Sbjct 14542 TATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGC 14601 Query 2410 TGTGCAGAGACCCATCTTGGTGTCTCTCTTGCGCAACCCTAATGAACAATTTGTCTGAAG 2469 | || | |||||| |||||| | ||||| || |||| |||| ||| | ||||| Sbjct 14602 TATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTAA--AACAGTTTATTTGAAG 14659 Query 2470 GGCATTCTATGTTTTTGAGGATGTCGAGCATTTGTTCTTTTGGAATAGGGCATTTTGGGT 2529 | || | | ||| | | || | ||||| ||||| |||| ||| |||||||| Sbjct 14660 GACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATCTTTAGGAAGAGGACATTTTGGAA 14719 Query 2530 ATGTGAGAAATATATTTTTGGCTTTAATTTGAAAACTACGCTGACGAGGCATTTTGGGGA 2589 |||| |||||||| ||||| | || | || || | | | | ||||||||| || Sbjct 14720 ATGTAAGAAATATGTTTTTAGAATTTACCTGGAATGAATGAAGCCTTGGCATTTTGTAGA 14779 Query 2590 ---GCAATCGGGGGCTCTCAAAACTCTACACAATTGGGGGCTTTGGGAGCCCATATATAC 2646 | ||| ||| ||| | | ||| | |||||| ||||||||||||| ||||||| Sbjct 14780 AATGAAAT-GGGTACTC-CGACTTCCTATGC-ATTGGGTGCTTTGGGAGCCCTTATATAC 14836 Score = 111 bits (122), Expect = 3e-21 Identities = 260/387 (67%), Gaps = 9/387 (2%) Strand=Plus/Plus Query 938 GAATCATACAGAAAATGCCCTTATGCTGTATATGGCGTGCACTCACGCCTCAAATCCTGT 997 || |||||| |||||||| | | ||||||| | ||||| || || |||||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 998 ATATGCAACTCTGAAGATCCGGATCTATTTTTATGATTCGGTCTCAAATTAATAAACGTT 1057 |||| ||| ||| | || | ||||||||||| || ||||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1058 AAACTTTATTGAATAATTTCTGTTTACATCAATCGTCCCGTGTATGACATTCCAT-ACAC 1116 || |||||| || || | |||||| | || | || ||||| || | || Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1117 GTGATCAACAGCTCTAATTACATTATTTATACTGATAAC-GCTA--GGTTATTAAGATAC 1173 | || ||||||||||| | ||| || ||||| ||||| ||| | | | || || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT-- 13314 Query 1174 TTTAACACTTGTGTCTTAAAGACTTTCAAGAAAAGCCCAGTCGGCGGTTGTAAAACCGTC 1233 || | || | ||||| ||| | ||||||| ||||| || ||||| ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1234 CAGATCTGGTAGGTTAGAAAACACTTGTGAATCTGAAGTTCCCTCCTGATGTTGTGGTTG 1293 | ||||| | || | || ||| ||||||| | |||||| |||| | |||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1294 AATCGTATCTCCAGTTTGATGACGTCG 1320 ||||| || | | || ||| | |||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684873183370