Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_024894.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq19028 251 1e-63 >seq19028 Length=31091 Score = 251 bits (278), Expect = 1e-63 Identities = 429/622 (69%), Gaps = 25/622 (4%) Strand=Plus/Plus Query 1625 AtttttttCCTCGTCCAGATATTCTTTATAACTGCTGTTTGGACCTTTATTGCACAGGAA 1684 |||||||||||| || || | |||||||| ||| | ||||| |||||||| ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1685 GATAGTGGGAATTCCTCCTTTAATCATGACCGGCTTTCCGTACTTGGTATTGCTTTGCCA 1744 ||| || || || || || || ||| | || ||| ||||||| || ||||| ||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1745 GTCACGCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATC 1804 | | ||||||||||| || |||||||||||||||||||| || ||||| |||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1805 AATGACGTTGTACCAGGCATCATTGCTATACACCTTTGGGCTCAAATCAAGATGTCCACA 1864 ||||| ||| |||||||||| ||| ||| | || ||||||| | ||| || || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1865 CAAGTAATTGTGGGGTCCTAAACAACGAGCCCACATTGTTTTGCCCGTTCTACTATCACC 1924 | |||||| || ||||||||| | | |||||| ||| || || |||||| ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1925 CTCTATGACTATTCCTATGGGTC-TAAAAGGCCGCGCAGCGGCACACACAACATTGACAT 1983 ||| ||||| || | |||||| | || ||||||||||||||| | |||||| || Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 1984 TGGCCCAATCGACGAGTTCTGGAGGAACTC---TGTCGAAGGAAGAAATTGAAAATGGAG 2040 ||||| | |||| ||| |||||||||| ||| ||| Sbjct 14187 CTGCCCA-----------------GCACTCAATTGTTGAAGGAAGAACAACTAAAAGGAC 14229 Query 2041 AAACATACACCTCAGACGGAGGTGTAAAAATCCTATCTAAATTACTAACTAAATTGTGAT 2100 |||||| |||| || || | || || | |||||| || ||||| ||| |||| Sbjct 14230 TAACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGAT 14289 Query 2101 ATTGTAATACAAAATCTTTG--GGAGCCTTTTCTCTTAAAATATTGAGGGCCGCAGCTTT 2158 |||| |||| ||| ||||| || |||||||| | |||| || || | | | Sbjct 14290 ATTGAAATAGAAA--CTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAAT 14347 Query 2159 GGACCCTGAATTGATTGCCTCGGCATATGCATCGTTGGCAGATTGGCAACCTCCTCTAGC 2218 || | | | | || || ||| || |||| || | | || ||||||||||||| Sbjct 14348 TGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGC 14407 Query 2219 TGATCGTCCATCGATCTGGAAA 2240 |||||||||||||| || ||| Sbjct 14408 AGATCGTCCATCGATTTGAAAA 14429 Score = 145 bits (160), Expect = 1e-31 Identities = 266/387 (69%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 939 GAATCATACGGAAAACGCATTAATGTTGTATATGGCCTGTACTCACGCATCAAATCCTGT 998 || |||||| ||||| ||||| ||||||||| | ||||| ||||| |||||||| Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 999 ATATGCTACTTTGAAAATCCGGATCTATTTTTATGATTCGGTAACAAATTAATAAACATC 1058 |||| |||| ||| || || | ||||||||||| ||| |||||||||||| || Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1059 TAACTTTATATCATATGAAGTCCAA--ACTTCAATCGTTTGTTCCAGTACATTATCCAAT 1116 || ||||| || |||| | ||| || || | ||||| || | |||||| ||| Sbjct 13197 GAATTTTATTTC--ATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAAT 13254 Query 1117 ACATGATAAACTGCCCTAAATACATTATTAATTCCTATTACACCTAACATATCCAGGTAC 1176 |||| | || || |||| | ||| ||||| | || |||||||| || | | Sbjct 13255 ACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1177 TTAAGGACCTGGGTTTTGAAGACTTTCAAGAAAAGCCCAATCTGAGGGCGTAAGCCCGTC 1236 || | || | ||| || ||| | ||||||| || |||| ||||| | ||| Sbjct 13315 TTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTC 13374 Query 1237 AAGATTTTGAAAGTTAGAAAACACTTGTGAAGTCCTAGGGCTTTCCGCAGGTTGTGGTTG 1296 ||| ||||| | || ||| |||||||| || | |||| ||||||||||||| Sbjct 13375 CTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTG 13434 Query 1297 AACTGTATTTGAATCTTGATTATGTCG 1323 || | ||||| || | |||||||||| Sbjct 13435 AATCGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8646487003554