Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_025964.1 Length=2752 Score E Sequences producing significant alignments: (Bits) Value seq19028 482 4e-133 >seq19028 Length=31091 Score = 482 bits (534), Expect = 4e-133 Identities = 676/945 (72%), Gaps = 19/945 (2%) Strand=Plus/Plus Query 1649 TATTCTTCTCCTCGTCCAGGTACTCCTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGA 1708 |||| || ||||| || ||| |||| |||||||||||| | || ||||||||||| | || Sbjct 13826 TATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGA 13885 Query 1709 AGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTG-C 1767 |||| || || || ||||| || || | || ||| | ||||| ||| || | | | | Sbjct 13886 AGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTT-GCTGGAC 13944 Query 1768 CAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCA 1827 || | |||||||||||||| |||||||||||||||||||| || || ||||| |||| | Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTA 14004 Query 1828 TCAATGACGTTGTACCAGGCCTCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGCCCA 1887 ||||||| ||| |||||||| | ||| || | || | | |||| ||| || Sbjct 14005 TCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCG 14064 Query 1888 CACAGATAATTATGTGGTCCAAGTGATCTGGCCCACATCGTCTTTCCCGTTCTACTGTCA 1947 || || |||||||||||||| | ||||| |||||| ||||| || |||||| ||| Sbjct 14065 CATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCA 14124 Query 1948 CCCTCTATGACTATACTTATGGGTC-TCAAAGGCCGCGCAGCGGCACTGACAACATTCTC 2006 ||||| ||||| ||||| |||||| | || ||||||||||||||| |||||| || Sbjct 14125 CCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Query 2007 GGCAGCCCACTCCTCAAGTTCTTCGGGAACTTGATCAAAGGAAGAAGACGAAAAAGGAGA 2066 || ||||| ||||| ||| | ||||||||| | ||||||| Sbjct 14185 AGCTGCCCAGCACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACT 14230 Query 2067 AACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATA 2126 ||||||| || ||| || | || || | |||||| || || ||||||||| Sbjct 14231 AACATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATA 14290 Query 2127 TTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCGTCAGCAGA 2186 |||||| | ||| | | || | |||||| ||||| || | | ||| | ||| || Sbjct 14291 TTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGA 14350 Query 2187 ACCGGCATTTAACGCCTCTGCTGCAACATCATTAGCTGTCTGTTGACCTCCTCGAGCAGA 2246 ||| ||||||| ||||| | |||||||| | ||| ||| |||||||| |||||| Sbjct 14351 TGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGA 14410 Query 2247 TCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGA 2306 || ||||||||| ||||| | ||||||||| ||||||||| ||| ||| ||||||| Sbjct 14411 TCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTT 14470 Query 2307 CTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGAGTTGAGGTATA 2366 ||| ||||| || || ||||| ||||||||||||||| || || |||| Sbjct 14471 CTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGGTATGTGGTGCTAGTATT 14530 Query 2367 GGGGTGAGTGACATCAAAATGTCTGGGGTTTCTGAACTGGGATTTACCTTTGAACTGGAT 2426 || || ||| ||| || ||||| |||||||| || || | || |||| ||| || || Sbjct 14531 AGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAAT 14590 Query 2427 GAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGACACTCTGATAAATAA 2486 ||||||||| |||| | |||||| |||||||||||||| | ||||| ||| | Sbjct 14591 AAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCT--AAAACAG 14648 Query 2487 TTTATCAGAAGGACAGGAAATGTTTTTAAGGAGTTCGAGCATTTGCTCCTTTGGTAATGG 2546 ||||| |||||||| |||| | ||| | | | || | ||||| || || || | || Sbjct 14649 TTTATTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATCTTTAGGAAGAGG 14708 Query 2547 ACATTTCGGATAAGTGAGGAAGATATTTTTGGCCTTCACTTGGAA 2591 |||||| ||| | || || || || ||||| | || || ||||| Sbjct 14709 ACATTTTGGAAATGTAAGAAATATGTTTTTAGAATTTACCTGGAA 14753 Score = 172 bits (190), Expect = 1e-39 Identities = 219/298 (73%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 961 GAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCTGT 1020 || ||||||||| ||||||||| |||||||| | || || || ||||| ||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1021 GTATGCTACATTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAATATT 1080 ||| ||| ||| | ||| | ||||||||||| ||||| |||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1081 GAATTTTATATCATGATTCTCAATTACATTAATTGTGCCCTCAAGTACATCATATAATAC 1140 ||||||||| ||||||| |||| ||||| | ||| ||||| ||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1141 A-TGTCTGAAAGCCTTAATACAATTATTTATACTAATTACGCCTAAACTATCTAAATATC 1199 | ||||| | ||| ||||| ||| || |||||||| || ||||| | |||||| || Sbjct 13257 ATTGTCT-ACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATT 13315 Query 1200 GTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCCAGTCTGAGGATGTAAACGAGT 1257 | || || ||||| |||||||||||| ||| ||||| |||||||||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694469728324