Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30]
33,873 sequences; 833,080,760 total letters
Query= NC_027040.1
Length=2750
Score E
Sequences producing significant alignments: (Bits) Value
seq19028 244 2e-61
>seq19028
Length=31091
Score = 244 bits (270), Expect = 2e-61
Identities = 304/415 (73%), Gaps = 1/415 (0%)
Strand=Plus/Plus
Query 1584 TGGTTCCGTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAGGCTTTTAATGCTGAATT 1643
||||| |||| |||| |||||| ||||| | || | ||| ||||||| |||
Sbjct 13770 TGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATT 13829
Query 1644 CTTATCCTCATTCAGGTACTCTTTATATGATGACGTTGGTCCTGGATTGCAGAGGAAGAT 1703
|| ||||| | ||| |||||||||| || || || || |||||||| | ||||||
Sbjct 13830 TTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGAT 13889
Query 1704 AGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTC 1763
|| || || || || || || | | ||| | ||||| || ||||| ||| |
Sbjct 13890 TGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATT 13949
Query 1764 CCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAAT 1823
|||||||||||||| || |||||||||||||||||||| || || || |||| ||||||
Sbjct 13950 GCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAAT 14009
Query 1824 GACGTTATACCAAGCATCGTTACTGTACACCTTTGGACTGAGATCAAGGTGACCACACAG 1883
|| ||||||||| |||| || || | || | | | ||| | ||||| || ||
Sbjct 14010 GATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAG 14069
Query 1884 ATAATTATGTGGGCCTAATGATCTGGCCCACATGGTCTTACCCGTACGACTATCGCCCTC 1943
||||||||||| ||||| ||||| |||||| ||||| || || | | || |||||
Sbjct 14070 GTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129
Query 1944 AATCACAATACTATTGGGTC-TCCATGGCCGCGCAGCGGCATCCCTTACATTCTC 1997
||| |||||||| ||||||| | |||||||||||||||||||||| ||||| ||
Sbjct 14130 AATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184
Score = 176 bits (194), Expect = 8e-41
Identities = 312/439 (71%), Gaps = 17/439 (4%)
Strand=Plus/Plus
Query 955 TCATACGGAGAACGCCTTGTTATTGTATATGGCCTGTACTCATGCTAGTAATCCAGTGTA 1014
|||||| || || || ||||| |||||| | |||||||| |||||| || ||
Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139
Query 1015 TGCTACTTTGAAGATCAGG-ATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTG 1072
| |||| ||| || || | | ||||| ||||| ||| ||| |||||||||| ||||
Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197
Query 1073 AATTTTATTATATTTGATAATTGAG--CATCGATTGTGCCCTCTAATACATCCCATAATA 1130
||||||||| || |||| | || |||| | ||| ||| | ||||| ||||||
Sbjct 13198 AATTTTATTTCAT--GATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255
Query 1131 CATGAT-TACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATAT 1189
||| | |||| |||||||| | ||||||||||||||| ||||| || |||||| ||
Sbjct 13256 CATTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314
Query 1190 TTCA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGT 1248
|||| |||| ||| ||||||||||||||||| | ||| |||| |||| |||||
Sbjct 13315 TTCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373
Query 1249 CCAGATCTGGAAGATCAGATAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTT 1308
|| ||||| |||| | || || | ||| | || | |||||||||||||||||
Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433
Query 1309 GAATTGTATATGGATCGTTATGATGTC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCT 1367
|||| | || || || || ||||| || || | ||| |||||| | ||| |
Sbjct 13434 GAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGT 13492
Query 1368 TGGTTATCTTGAAATAGAG 1386
|| ||||||||||| ||
Sbjct 13493 TGAGGATCTTGAAATATAG 13511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8688072031688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |