Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_027040.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq19028 244 2e-61 >seq19028 Length=31091 Score = 244 bits (270), Expect = 2e-61 Identities = 304/415 (73%), Gaps = 1/415 (0%) Strand=Plus/Plus Query 1584 TGGTTCCGTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAGGCTTTTAATGCTGAATT 1643 ||||| |||| |||| |||||| ||||| | || | ||| ||||||| ||| Sbjct 13770 TGGTTGTGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATT 13829 Query 1644 CTTATCCTCATTCAGGTACTCTTTATATGATGACGTTGGTCCTGGATTGCAGAGGAAGAT 1703 || ||||| | ||| |||||||||| || || || || |||||||| | |||||| Sbjct 13830 TTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGAT 13889 Query 1704 AGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTC 1763 || || || || || || || | | ||| | ||||| || ||||| ||| | Sbjct 13890 TGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATT 13949 Query 1764 CCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAAT 1823 |||||||||||||| || |||||||||||||||||||| || || || |||| |||||| Sbjct 13950 GCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAAT 14009 Query 1824 GACGTTATACCAAGCATCGTTACTGTACACCTTTGGACTGAGATCAAGGTGACCACACAG 1883 || ||||||||| |||| || || | || | | | ||| | ||||| || || Sbjct 14010 GATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAG 14069 Query 1884 ATAATTATGTGGGCCTAATGATCTGGCCCACATGGTCTTACCCGTACGACTATCGCCCTC 1943 ||||||||||| ||||| ||||| |||||| ||||| || || | | || ||||| Sbjct 14070 GTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129 Query 1944 AATCACAATACTATTGGGTC-TCCATGGCCGCGCAGCGGCATCCCTTACATTCTC 1997 ||| |||||||| ||||||| | |||||||||||||||||||||| ||||| || Sbjct 14130 AATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Score = 176 bits (194), Expect = 8e-41 Identities = 312/439 (71%), Gaps = 17/439 (4%) Strand=Plus/Plus Query 955 TCATACGGAGAACGCCTTGTTATTGTATATGGCCTGTACTCATGCTAGTAATCCAGTGTA 1014 |||||| || || || ||||| |||||| | |||||||| |||||| || || Sbjct 13083 TCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1015 TGCTACTTTGAAGATCAGG-ATCTATTTCTATGATTCTGT-TCAGAATTAATAAAGATTG 1072 | |||| ||| || || | | ||||| ||||| ||| ||| |||||||||| |||| Sbjct 13140 TTGTACTATGA-GAACACGCAGTTATTTTTATGAGAGTGTATCA-AATTAATAAATATTG 13197 Query 1073 AATTTTATTATATTTGATAATTGAG--CATCGATTGTGCCCTCTAATACATCCCATAATA 1130 ||||||||| || |||| | || |||| | ||| ||| | ||||| |||||| Sbjct 13198 AATTTTATTTCAT--GATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATA 13255 Query 1131 CATGAT-TACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATAT 1189 ||| | |||| |||||||| | ||||||||||||||| ||||| || |||||| || Sbjct 13256 CATTGTCTACA-GCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAAT 13314 Query 1190 TTCA-TACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGT 1248 |||| |||| ||| ||||||||||||||||| | ||| |||| |||| ||||| Sbjct 13315 TTCATTACA-CGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Query 1249 CCAGATCTGGAAGATCAGATAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTT 1308 || ||||| |||| | || || | ||| | || | ||||||||||||||||| Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433 Query 1309 GAATTGTATATGGATCGTTATGATGTC-GTGGTTGGTGTTGAATGGTCTCTCGTGGTGCT 1367 |||| | || || || || ||||| || || | ||| |||||| | ||| | Sbjct 13434 GAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTG-TTGGTCTGAGATTGTGGT 13492 Query 1368 TGGTTATCTTGAAATAGAG 1386 || ||||||||||| || Sbjct 13493 TGAGGATCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8688072031688