Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_027129.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq19028 260 2e-66 >seq19028 Length=31091 Score = 260 bits (288), Expect = 2e-66 Identities = 490/716 (68%), Gaps = 19/716 (3%) Strand=Plus/Plus Query 1613 GCATTCTTTAAAGCCCAATTTTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTA 1672 ||||| | |||| ||||||||| | | | ||| || || || || | |||||||||| Sbjct 13795 GCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTA 13854 Query 1673 TAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGA 1732 ||||||||| | || || |||||||| | |||||| || || || || || || || | Sbjct 13855 TAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTT 13914 Query 1733 ACTGGCTTTCCGTACTTTGTATTTGATTG-CCAGTCCCTTTGGGCCCCCATGAACTCTTT 1791 || ||| ||||||| ||| || | | | ||| | |||||||||||||| |||||||| Sbjct 13915 ACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTT 13973 Query 1792 AAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACT 1851 |||||||||||| || || |||||||||| |||||||| ||| |||||||| | ||| Sbjct 13974 AAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGA 14033 Query 1852 GTAGACCTTGGGACTGAGGTCCAGATGACCACATAGATAATTATGTGGTCCCAATGCACG 1911 || | || | | | || | |||||| ||||| |||||||||||||| || | | Sbjct 14034 ATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCT 14093 Query 1912 CGCCCACATCGTCTTCCCCGTCCTACTATCACCCTCTATGACAATACTTATGGGTCG-CA 1970 |||||| |||||||| || ||| |||||||| ||||||||||| ||||||| | Sbjct 14094 TGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTA 14153 Query 1971 AAGGCCGCGCAGCGGCACTGACGACGTTCTCGGCAGCCCATTCCTCAAGTTCTTCTGGAA 2030 | ||||||||||||||| || || || || ||||| ||||| Sbjct 14154 ATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------------ 14201 Query 2031 CTTGATCAAAGGAAGAAGANNNAAAAGGAGAGACATAAACCTCCATTGGAGGTGTAAAAA 2090 ||| | ||||||||| | ||||||| |||||| || || || | || | Sbjct 14202 -TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCATGAATA 14259 Query 2091 TCCTATCTAGATTAGCATTTAAATTATGAAACTGAAGTACATAATCTTTTGGTGCTAATT 2150 | | ||||| || | | || ||||||| | |||| || | | | | ||| | || Sbjct 14260 TTCGATCTAATTTTGGAACTATATTATGATATTGAAATAGAAACTTTGCTGGCATTTTTT 14319 Query 2151 CCTTAATGACTCTAAGAGCCTC-TGACTTACTGCCTGCGTTAAGCGCTGTGGCGTAAGCA 2209 | |||| | ||| || || | | || || || | | |||| || | || Sbjct 14320 CTCTAATAATAGAAAGCGCTTCTTCAATTGATG-TAGCACTTAACGCTTCTGCAGATACA 14378 Query 2210 TCATTGGCTGACTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAG 2269 ||||| | || ||| || ||||| ||||||| ||||||||| ||||| | |||||| Sbjct 14379 TCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAAATTGCCCCAG 14438 Query 2270 TCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCCGAGCTTGATTTAGC 2325 ||| | || | ||| ||| | | || ||| || || || ||||||||| Sbjct 14439 TCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGATTTAGC 14494 Score = 147 bits (162), Expect = 4e-32 Identities = 249/360 (69%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 959 GAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACCCACGCCTCTAATCCTGT 1018 || ||||||||| ||||||||| |||||||| | || || || ||||||||||| Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1019 GTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAAGATT 1078 ||| ||| ||| | ||| | || || ||||| ||||| |||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1079 AAATTTTATTGAATATGATTGGTGTACATATACAACATGGTGTAATACATTCCATAATAC 1138 ||||||||| || ||| |||||| || || | | |||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1139 ATGATCAACAGCCCTAATTACATTGTTAATACTAATAACTCCTAAATTATTCAAATATTT 1198 || || ||||| ||||| | |||||||||||||||||| ||||| | ||| |||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1199 AATCACTTGGGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAAGCTGTGAAGTCATCCA 1258 || || | ||||| || ||||||||| |||||| | || || ||| Sbjct 13317 CATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCT 13376 Query 1259 GATTCGGAAGGCTATGAAACATTTGTGAATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1318 ||| |||| | |||| |||||||| || | |||||||||||||| ||||| Sbjct 13377 GATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8659282396826