Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_027215.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value seq19028 394 2e-106 >seq19028 Length=31091 Score = 394 bits (436), Expect = 2e-106 Identities = 1035/1571 (66%), Gaps = 110/1571 (7%) Strand=Plus/Plus Query 970 GAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGT 1029 || |||||||||||| || ||||| |||||| | |||||||| |||||||| || Sbjct 13080 GACTCATACTGAAAATGCATTGTT---GTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1030 GTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAATAAAAATT 1089 ||| ||||||| || ||||| || || ||||| ||||||||||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1090 AAATTTTATATCATGGGTTTCTGTTACATCTATTGTCTTTTCAAGTACATCATACAATAC 1149 |||||||| ||||| ||| |||||| | ||| | |||| ||||| | ||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1150 ATGGTCAACTGCTCTAATTACATTGTTAATGGAAATTACACCTAAACTATCTAAATACTT 1209 || ||| || |||||||| | ||||||||| ||| |||||||| | |||||| | || Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTT 13316 Query 1210 AAGAACTTGATATCTTCTAAATACTTTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGT 1269 | || || || | ||||||| |||||||| ||| |||| ||||| || Sbjct 13317 CATTACACGAAATTT---AAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGT 13373 Query 1270 CCAGATTCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTACCTTCCTGATGTTGTGATT 1329 || ||| ||||||||| ||| |||||||| |||| ||||||| | |||||| || Sbjct 13374 CCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTT 13433 Query 1330 GAAGCGGATCTGCATTGAAATGATGTCG-TGATCCATGTTGAATGGTTTCTGGCTGTGTT 1388 ||| || || || ||| || |||||| | || | ||| |||| | | |||| | Sbjct 13434 GAATCGAATTTGTATTTCGATTATGTCGGTTGTCGAATTTGT-TGGTCTGAGATTGTGGT 13492 Query 1389 CTGTTATCTTGAAATATAGGGGATTGTT--TATCTCCCAGATA------------AAA-- 1432 |||||||||||||| | | | ||| ||||| ||| ||| Sbjct 13493 TGAGGATCTTGAAATATAGAA-ACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACG 13551 Query 1433 -----ACGCCATTCTCTGCTTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGG 1487 ||||||||| ||||| ||||||||||| |||||||||||| | ||||||| Sbjct 13552 ACTAGACGCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGA 13611 Query 1488 TTGATGCAGTTGATGT----GAAGATAGTATGAGCAGCCACAGTCTAGGTCTACACGCTT 1543 ||| | || | ||| || ||| || ||||| ||||||| || | Sbjct 13612 CCAGAACAGCTAATATTTTTGAATAT----TGAACATCCACAAGGCAGGTCTAGTCGTCT 13667 Query 1544 ACGCCTGATTGGTTTCTTCTTG-------GCTATCT---TGTGTTGGA---CCTTG---- 1586 | |||||| || |||||||| | ||| | || | | | ||||| Sbjct 13668 TCTTCTGATTTGTCTCTTCTTGATATCCGGATATGTAAATGAGGTTGCTTTCCTTGTATA 13727 Query 1587 --------------ATTGGTA---------CTTGA-GAACAGTGGCTTATAGAGGGTGAT 1622 ||||| | || | ||| | ||| | || |||| Sbjct 13728 ATGTCTATGCATCCATTGGGATAACATTTCCTGCACGAATAATGGTTGTGTGATGGTGTA 13787 Query 1623 GAAGGTTGCATTCTTGAGAGCCCAATTTTTCAATGACAGGtttttttCTTCATCTAGATA 1682 ||| |||||| | | || ||||||||| ||| | |||||||| || || || | Sbjct 13788 GAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAA 13847 Query 1683 TTCTCTATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTT 1742 ||| |||| |||||||| || |||||||| | |||||| || || || ||||| || Sbjct 13848 CTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTT 13907 Query 1743 AATTTGAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAA 1802 || | | || | ||||||||| ||||| ||| | |||||||||||||| || Sbjct 13908 TATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAA 13967 Query 1803 TTCTTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATC 1862 |||||||||||||||| ||||||||| || |||| |||||||| ||| ||||| |||| Sbjct 13968 CTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATT 14027 Query 1863 ATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAA 1922 ||||||| | || ||| | | ||| | ||| || || | ||||| ||||| ||||| Sbjct 14028 ATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAA 14087 Query 1923 CGATCGTGCCCACATTGTTTTTCCGGTACGACTATCACCTTCGATTACAATACTATCAGG 1982 |||| ||||||| ||| || || || | | ||||| || || |||||||| | || Sbjct 14088 AGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGG 14147 Query 1983 TC-TCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACCTCAAGTTCCT 2041 || | ||||||||||||||| | | | || || || | |||| ||||| Sbjct 14148 TCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA------ 14201 Query 2042 CTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAATATAAGGACCTGGAGGCTCCT 2101 ||| || || |||||| | ||||||| || |||||| | ||||| | Sbjct 14202 -------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGTTCAGGAGGGGGCA 14253 Query 2102 GAAAAATTCTATCTAAATTANNNNNNNNNNTATGAAACTGTAAAACGTAATCTTTGGGGG 2161 || |||| |||||| || ||||| | || ||| || ||||| || Sbjct 14254 TGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATAGAAACTTTGCTGG 14311 Query 2162 C--TAGTTCCCTAATGACTCTAAGAGCTTC--CGACTTACTTCTTG-AGTTAAGAGCTGC 2216 | | ||| ||||| | ||| ||||| | | | | | | | | |||| ||| | Sbjct 14312 CATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGA--TGTAGCACTTAA-CGCTTC 14368 Query 2217 TGCGTAAGCATCGTTTGCAGATTGTTGTcccccccTTGCAGACCTTCCATCGATCTGAAA 2276 ||| | |||| |||| | ||| || || || ||||| | ||||||||| ||||| Sbjct 14369 TGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCATCGATTTGAAA 14428 Query 2277 CTCTCCCCAATCGATGGTGTCTCCATCCTTATCGATGTAGGACTTGACATCAGATGATGA 2336 | ||||| ||| || || | || || ||||||| ||| ||||| || ||||| Sbjct 14429 ATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACATCTGAAGATGA 14488 Query 2337 TTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACT-TGGGGAT--ACCAGGTC 2393 |||||| || | |||||| ||| ||||| || ||| | | |||| | | || Sbjct 14489 TTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG--CTAGTATTAGGATGGATGATATC 14545 Query 2394 GAAGAATCTGTTATTTGTGCACTGGTACTTTCCTTCGAACTGAACAAGGGCATGCAGATG 2453 |||| ||| ||| | | || ||| |||||||| |||| ||||||||| ||| Sbjct 14546 GAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGGCATGGCTATG 14605 Query 2454 AGGTTCCCCAT 2464 | |||||||| Sbjct 14606 AAATTCCCCAT 14616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8831926682645