Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_028046.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq19028 313 4e-82 >seq19028 Length=31091 Score = 313 bits (346), Expect = 4e-82 Identities = 616/901 (68%), Gaps = 29/901 (3%) Strand=Plus/Plus Query 1603 TGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTCTC 1662 ||||| |||| ||| ||||| | |||| ||||| ||| | | ||| || || Sbjct 13776 TGTGATGGTGTAGAATTCTGCATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTC 13835 Query 1663 TTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGG 1722 || || | ||||||||||||||||||| | || || |||||||| | |||||| | || Sbjct 13836 CTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGG 13895 Query 1723 AATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTG-CCAGTCTCTTT 1781 || ||||| || || | || ||| ||||||||||| || | | | ||| | |||| Sbjct 13896 TATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTT-GCTGGACCAATTGCTTT 13954 Query 1782 GGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCAATGACGT 1841 |||||||||| || ||||||||||| ||||||||||||||||| |||| |||||||| || Sbjct 13955 GGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAATGATGT 14014 Query 1842 TATACCAAGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACATAGGTAGT 1901 ||||||| |||| ||| || | |||| | | ||||| ||||| |||||||| | Sbjct 14015 TATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAGGTAAT 14074 Query 1902 TATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCA 1961 ||||||| || ||||| || |||||| ||||| || || ||| ||||||||||| | Sbjct 14075 TATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGA 14134 Query 1962 CAATACTCATGGGTC-TCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAAGCCCAG 2020 |||||||| |||||| | || ||||||||||||||| || | || || |||| |||||| Sbjct 14135 CAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAG 14194 Query 2021 TCTTCAAGTTCTGCCGGAACTTGATCGAAAGAAGAAGATAGAAAAGGAGATACATAAACC 2080 |||| ||| | ||| |||||| | ||||||| |||||| Sbjct 14195 CACTCAA-------------TTG-TTGAAGGAAGAACAACTAAAAGGACTAACATAAGGT 14240 Query 2081 TCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACA 2140 || || || || | || || | |||||| || | | || ||||||| |||| ||| | Sbjct 14241 TCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATTG--AAATA 14298 Query 2141 TAATCTTT--TGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAAT 2198 || |||| ||| ||| || || | |||| || || | || | | Sbjct 14299 GAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATGTAGCAC 14358 Query 2199 TGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCAT 2258 | | || || ||| || | || || | | || ||||||||||||| |||| |||| Sbjct 14359 TTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGATCGTCCAT 14418 Query 2259 CGATCTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACAT 2318 |||| || ||| || |||| || | || | ||||||| | | || || |||| Sbjct 14419 CGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTCTTAACAT 14478 Query 2319 CTGAAGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGT-TGGGGA- 2376 ||||||| ||||| || | |||||| ||| ||||| || || || | ||| Sbjct 14479 CTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTG--CTAGTATTAGGAT 14535 Query 2377 -AATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAATTGGACGAGCA 2435 |||| |||||| ||| |||| | |||| || || |||||||| | || Sbjct 14536 GGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAATTGAATAAGGG 14595 Query 2436 CGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAACCCTAATAAATAATTTAT 2495 | || |||| |||||||| || ||| |||| || || ||| ||| | ||||| Sbjct 14596 CATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTA--AAACAGTTTAT 14653 Query 2496 T 2496 | Sbjct 14654 T 14654 Score = 98.7 bits (108), Expect = 2e-17 Identities = 238/359 (66%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 969 CACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTAT 1028 || || || ||||| ||| |||||||| | |||||||| ||||| ||||| ||| Sbjct 13084 CATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1029 GCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAATAAATGTTG 1088 ||| | | | || | || ||||| || |||| | ||||||||||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCA---AATTAATAAATATTG 13197 Query 1089 AATTTTATTATGTGTGAACTTTGTACATAAACTGTTTGGGCTAATACATTCCATAATACA 1148 ||||||||| || | |||||| |||||||| | | |||||| |||||||| Sbjct 13198 AATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACA 13257 Query 1149 TGGTCCACAGCTCGAATTACATTGTTTATGGAAATTACAGCAAAATTATTAATATATTGC 1208 | ||| ||||||| ||| | |||||| || ||| ||| | || | | | ||| | Sbjct 13258 TTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1209 AACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAG 1268 | || | ||||||| ||||||||| ||| |||| |||| |||| | Sbjct 13318 ATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTG 13377 Query 1269 ATTCGGAAGGTTAGAAAACACTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAA 1327 || |||| | || ||| ||||| | || | |||||||||||||| ||||| Sbjct 13378 ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAA 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668878941780