Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_028114.1 Length=2765 Score E Sequences producing significant alignments: (Bits) Value seq19028 228 1e-56 >seq19028 Length=31091 Score = 228 bits (252), Expect = 1e-56 Identities = 266/358 (74%), Gaps = 1/358 (0%) Strand=Plus/Plus Query 1650 ATTTTTATCCTCGTCCAGATATTCTTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAA 1709 |||||| ||||| || || | |||||||| ||| || || || |||||||| | ||| Sbjct 13827 ATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAA 13886 Query 1710 GATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCA 1769 ||| || || || || || || || | | ||| | ||||| ||| ||||| ||| Sbjct 13887 GATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACCA 13946 Query 1770 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCTACGTCATC 1829 | |||||||||||||| || |||||||||||||| |||||||||||||| |||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1830 AATGACGTTGTACCACGCATCATTGCTGTACACCTTGGGGCTCAGGTCAAGATGACCGCA 1889 ||||| ||| ||||| |||| ||| || | || ||| || | ||||||||| Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1890 CAGATAATTGTGAGGTCCTAATGATCTGGCCCACATTGTTTTGCCGGTACGACTATCACC 1949 || ||||| || |||||||| ||||| |||||| ||| || || || | | ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1950 CTCAATTACTATACTATTCGG-CCTCCATGGCCGCGCAGCGGCATCCATGACGTTCTC 2006 |||||| || ||||| || || | | |||||||||||||||||||| | || || || Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Score = 210 bits (232), Expect = 4e-51 Identities = 309/433 (71%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 965 CATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTAT 1024 |||||||| ||||| ||||||| |||| | |||||||| |||||||| || ||| Sbjct 13084 CATACTGAAAATGCATTGTTGT---ATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1025 GCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAATAAATATTAAAT 1084 |||| | | | ||| | || || ||||| || |||||||||||||| ||| Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1085 TTTATTTCATGATTCTCGTCGACTTGAAGTGTCTTTAGAATTACATCGTATAATACATGA 1144 ||||||||||||| || || | | ||| | |||||||| | ||||||||| Sbjct 13201 TTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATTG 13260 Query 1145 TCAACTGCTCTGATTACATTATTAATTGAAATAACTCCTAATCTATCTAAATATTTAAGA 1204 || || ||||| || | ||| ||||| |||||| ||||||| |||||| |||| | Sbjct 13261 TCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCATT 13320 Query 1205 ACGTGATTCCTAAATACGCTTAAGAAAAGACCAGTCTGAGGCTGTAAGCTCGTCCAGACC 1264 || || ||||||| |||||||||| ||| |||| |||| | |||| || | Sbjct 13321 ACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGATC 13380 Query 1265 CTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAGGTTGTGGTTGAATCTT 1324 |||||||||| ||| |||||||| ||||||||||||||||||||||||||||| Sbjct 13381 TTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCGA 13440 Query 1325 ATCTGGACTGATATGATGTCG--TGGGGCATGTTGAATGGCCGGTTGTCGTGGTCGATAA 1382 || || | | || |||||| || | || ||| ||| | | | ||||| || | Sbjct 13441 ATTTGTATTTCGATTATGTCGGTTGTCGAAT-TTG-TTGGTCTGAGATTGTGGTTGAGGA 13498 Query 1383 TCTTGAAATATAG 1395 ||||||||||||| Sbjct 13499 TCTTGAAATATAG 13511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732763434850