Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_028124.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq19028 275 1e-70 >seq19028 Length=31091 Score = 275 bits (304), Expect = 1e-70 Identities = 474/683 (69%), Gaps = 19/683 (3%) Strand=Plus/Plus Query 1655 TTCTTTTCCTCATCGAGGTATTCTTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAG 1714 || |||||||| |||||| | ||||||||||||||| | || ||||||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1715 ATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTG-CCA 1773 || || ||||| || || || || | || ||| ||||||| ||| || | | | ||| Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTT-GCTGGACCA 13946 Query 1774 GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATC 1833 | |||||||||||||| || ||||||||||||||||| || || |||||||||| ||| Sbjct 13947 ATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATC 14006 Query 1834 AATGACGTTGTACCAGGCCTCGTTGCTTTCTACCTTAGGACTAAGGTCTAGATGACCACA 1893 ||||| ||| |||||||| | || | | ||| | | | |||| |||||| || Sbjct 14007 AATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCA 14066 Query 1894 CAAATAATTGTGTGGACCCAAAGACCTAGCCCACATGGTCTTCCCCGTTCGACTATCACC 1953 | ||||| ||||| || ||||| || |||||| |||||||| |||| | ||||| Sbjct 14067 TAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACC 14126 Query 1954 TTCTACCACAATACTCATGGGTC-TCAATGGCCGCGCAGCGGCATCCACCACGTTCTCAG 2012 || | ||||||||| |||||| | ||||||||||||||||||||| || || |||| Sbjct 14127 CTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTCAG 14186 Query 2013 CAGCCCAGACTTCAAGTTCTTCCGGAACGGGaaaaaaaGAAGAAGATAAAAAAGGCGAAA 2072 | |||||| |||| || || || |||||| | |||||| || Sbjct 14187 CTGCCCAGCACTCAA-TTGTT-------------GAAGGAAGAACAACTAAAAGGACTAA 14232 Query 2073 CATAAACCTCCAACGGAGGACTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATT 2132 ||||| || || || | || || | |||||| || | | || ||||||| ||| Sbjct 14233 CATAAGGTTCAGGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTATGATATT 14292 Query 2133 GAAGTACATAATCTTTTGGTGCTAATTCTTTAATTACTCTAAGAGCCTC-TGACTTACTG 2191 ||| || | | | | ||| | |||| |||| | ||| || || | | || || Sbjct 14293 GAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAATTGATG 14352 Query 2192 CCTGCGTTAAGCGCTGCGGCGTAAGCGTCGTTGGCTGACTGTTGTCCCCCTCTTGCAGAT 2251 || | | |||| | || | | || || | || ||| || ||||| |||||| Sbjct 14353 -TAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAGCAGAT 14411 Query 2252 CTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGAC 2311 | ||||||||| ||||| | ||||||||| | || | ||| ||| | | || | Sbjct 14412 CGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGTATTTC 14471 Query 2312 TTGACATCTGAGCTTGACTTAGC 2334 || |||||||| ||| ||||| Sbjct 14472 TTAACATCTGAAGATGATTTAGC 14494 Score = 120 bits (132), Expect = 5e-24 Identities = 162/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 968 GAATCATACTGAGAATGCTTTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCAGT 1027 || ||||||||| ||||| ||| |||||||| | || || || ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATTG---TTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1028 GTATGCTACTCTGAAAATACGGATCTATTTTTATGATTCCGTAACAAATTAATAAATATT 1087 ||| |||| ||| || ||| | ||||||||||| ||| |||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1088 AAATTTTATTGAATAAGATTGTTCTATATATACAATGTGTTGTAATACATTCCATAATAC 1147 ||||||||| || | ||| || || || | || | | |||||| ||||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1148 ATGATCAACTGATCTGATTACATTATTAATACTGATAACTCCTAA 1192 || || || | ||| || | ||| |||||||| ||||| ||||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAA 13301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8767950393745