Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_028262.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq19028 378 1e-101 >seq19028 Length=31091 Score = 378 bits (418), Expect = 1e-101 Identities = 656/951 (69%), Gaps = 29/951 (3%) Strand=Plus/Plus Query 1652 TATTCTTCTCTTCATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGA 1711 |||| || || || || | ||||||||||||||| ||| | || || |||||||| | || Sbjct 13826 TATTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGA 13885 Query 1712 AGATAGTGGGAATGCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCC 1771 |||| || || || ||||| || || | || ||| ||||||| || ||||| || Sbjct 13886 AGATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGACC 13945 Query 1772 AGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCAT 1831 | | |||||||||||||| || ||||||||||||||||| || || ||||| |||| || Sbjct 13946 AATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTAT 14005 Query 1832 CAATGACGTTGTACCAGGCATCATTATTGTATACCTTT--GGACTAAGGTCTAGATGTCC 1889 |||||| ||| |||||||||| || ||| ||| ||| | | | |||| ||| || Sbjct 14006 CAATGATGTTATACCAGGCATTAT--TTGAATAAATTTTATTATTCAAATCTAAATGACC 14063 Query 1890 ACACAAATAATTATGTGGTCCCAATGATCTAGCCCACATCGTCTTCCCCGTTCGACTGTC 1949 || | |||||||||||||| || ||||| |||||| |||||||| |||| | || Sbjct 14064 GCATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTC 14123 Query 1950 ACCCTCTATCACAATACTTATGGGTC-TCAAAGGCCGCGCAGCGGCACTGACAACGTTCT 2008 |||||| || |||||||| |||||| | || ||||||||||||||| ||| || | Sbjct 14124 ACCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTT 14183 Query 2009 CGGCAGCCCACTCCTCAAGTTCTTCTGGAACTTGATCAAAGGAAGNNNNNNNNNNNNNNN 2068 | || ||||| ||||| | | |||| || ||| || Sbjct 14184 CAGCTGCCCAGCACTCAATTGTTGAAGGAA---GAACAACTAAA------------AGGA 14228 Query 2069 NNNNNNNNACCTCCACCGGAGGTG---TAAAGATCCTATCTAAATTACATTTTAAATTAT 2125 | | || ||||| | | || || | |||||| || || ||||| Sbjct 14229 CTAACATAAGGTTCA--GGAGGGGGCATGAATATTCGATCTAATTTTGGAACTATATTAT 14286 Query 2126 GATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCAGCTTCAG 2185 |||||||||| | ||| | | || | |||||| ||||| || | | || ||||| Sbjct 14287 GATATTGAAATAGAAACTTTGCTGGCATTTTTTCTCTAATAATAGAAAGCGCTTCTTCAA 14346 Query 2186 CCGAGCCTGCATTTAGGGCCTCTGCTGCAGCATCATCAGCTGTCTGTTGACCTCCTCGAG 2245 || ||| ||| || ||||| | |||||| | ||| ||| |||||||| || Sbjct 14347 TTGATGTAGCACTTAACGCTTCTGCAGATACATCATTTGTTGTATGTGAACCTCCTCTAG 14406 Query 2246 CAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGT 2305 |||||| ||||||||| ||||| | ||||||||| ||||||||| ||| ||| |||||| Sbjct 14407 CAGATCGTCCATCGATTTGAAAATTGCCCCAGTCGGTGTAATCACAGTCTTTCGCGATGT 14466 Query 2306 AGGACTTGACATCAGAGCTGGACTTTGCTCCCTGGAAGTTTGGATGGAAATGAGTTG-AG 2364 | ||| ||||| || || || || ||||||||||| ||| ||| | || Sbjct 14467 ATTTCTTAACATCTGAAGATGATTTAGCGGATTGGAAGTTTGGGTGG-TATGTGGTGCTA 14525 Query 2365 GTATTAGGGTGAGTTACATCGAAATGTCTGGGGTTTCTGAATTTGGATTTACCTTCGAAC 2424 |||||||| || | | |||||| ||||| |||||||| |||| | || |||||||| Sbjct 14526 GTATTAGGATGGATGATATCGAAGTGTCTAGGGTTTCTAAATTGTGCCTTGCCTTCGAAT 14585 Query 2425 TGGATAAGGGCATGAAGATGCAGAGACCCATCTTCGTGTTTTTCTTGTGATATTCTGATG 2484 || ||||||||||| ||| | |||||| | |||||||||||| | | ||| | Sbjct 14586 TGAATAAGGGCATGGCTATGAAATTCCCCATCCTGGTGTTTTTCTTGACAGACTCTAA-- 14643 Query 2485 AATAATTTATCAGATGGACAGGTTTTGGATTTGGGTAGTTCGAGCATTTGCTCTTTTGGT 2544 || | ||||| || ||||| | ||| | || | ||||| ||||| || Sbjct 14644 AACAGTTTATTTGAAGGACAAGAAACCTGTTTCAAGTGCTCTAAGATTTGATCTTTAGGA 14703 Query 2545 AATGGACATTTCGGATAAGTGAGGAAGATATTTTTGGCCTTCACTTGGAAT 2595 | |||||||| ||| | || || || || ||||| | || || |||||| Sbjct 14704 AGAGGACATTTTGGAAATGTAAGAAATATGTTTTTAGAATTTACCTGGAAT 14754 Score = 165 bits (182), Expect = 1e-37 Identities = 270/384 (70%), Gaps = 9/384 (2%) Strand=Plus/Plus Query 968 CATAGTGAGAATGCATTAATGTTGTATATGGCATGTACCCATGCGTCTAATCCTGTGTAT 1027 |||| ||| |||||||| ||||||||| | || ||||| ||||||||||| ||| Sbjct 13084 CATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1028 GCTACTCTGAAGATACGGATCTATTTTTACGATTCAGTATCAAATTAATAAAGTTTATAT 1087 |||| ||| | ||| | |||||||| || |||||||||||||||| || || Sbjct 13141 TGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAAT 13200 Query 1088 TTTATATCATAAGGCATTTC--TACATCAATGGTGTCTTCCATTACAATTTCTAATACAT 1145 ||||| |||| | ||| |||||| | || | || |||||| | |||||||| Sbjct 13201 TTTATTTCATGAT--ATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACAT 13258 Query 1146 -GTCTAAAAGTCCTGATACAATTATTCAAACTAATGACCCCTAAATTATCTAAATATCTC 1204 ||||| | || | ||| ||| || | |||||| || ||||| |||||| || || Sbjct 13259 TGTCTACAGCTC-TAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTC 13317 Query 1205 AAAACTTGAGTCTTAAATACTCTTAAGAAACGCCCAGTCTGAGGATGTAAACGAGTGAAG 1264 | || || |||||||||||||||||| ||| ||||| |||||||||| | Sbjct 13318 ATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTG 13377 Query 1265 ATCCTGAAGCCCAGAAAACACTTGTGTATCCCCAGAGCCTTCCTCAGGTTGTGATTGAAC 1324 ||| ||||| || ||| ||||| | ||| |||||||||||||||| ||||| Sbjct 13378 ATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAAT 13437 Query 1325 TGGATCCGGATGTTGATGATGTCG 1348 | || | || | ||| |||||| Sbjct 13438 CGAATTTGTATTTCGATTATGTCG 13461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700867424960