Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_028985.1 Length=2788 Score E Sequences producing significant alignments: (Bits) Value seq19028 230 4e-57 >seq19028 Length=31091 Score = 230 bits (254), Expect = 4e-57 Identities = 274/369 (74%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 1678 TTCTTGTCCTCGTCTAAGAACTCTTTATAGCTTGCATTGGGCCCTGGATTGCAGAGGAAG 1737 || || ||||| || | ||||||||||||||| | | | || || |||||||| | |||| Sbjct 13828 TTTTTTTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAG 13887 Query 1738 ATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTATTTT---GTGTTGGATTGC 1794 ||||| || || || || || || | || || | ||||||||| || |||| | Sbjct 13888 ATTGTCGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---C 13944 Query 1795 CAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCA 1854 || | |||||||||||||| ||||||||||||||||| || | ||||||||||||| | Sbjct 13945 CAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTA 14004 Query 1855 TCAATGATGTTATACCAAGCGTCGTTACTGTACACCTTTGGACTTAGATCTAAATGCCCA 1914 ||||||||||||||||| || | || || | || | | | ||||||||| || Sbjct 14005 TCAATGATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCG 14064 Query 1915 CATAGATAATTATGTGGGCCTAGTGACCTAGCCCATACGGTCTTTCCTGTTCTGCTTTCC 1974 ||||| ||||||||||| |||| || || ||||| | ||||| |||||||| || Sbjct 14065 CATAGGTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCA 14124 Query 1975 CCTTCAATCACTATACTAATCGGTC-TACTTGGCCGCGCAGCGGCATCGACGACGTTCTC 2033 || ||||| || ||||| | |||| | |||||||||||||||||| || || || Sbjct 14125 CCCTCAATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Query 2034 GGCCGCCCA 2042 || ||||| Sbjct 14185 AGCTGCCCA 14193 Score = 120 bits (132), Expect = 5e-24 Identities = 258/380 (68%), Gaps = 13/380 (3%) Strand=Plus/Plus Query 991 GAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCAAACCCTGT 1050 || ||||||||| ||||| |||| ||||||| | |||||||| || || ||||| Sbjct 13080 GACTCATACTGAAAATGCATTGT---TGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1051 GTATGCTACGTTAAAGATACGGATCTATTTCTACGATTCGGTATCTAATTAATATAATTT 1110 ||| ||| | | | ||| | ||||| || || ||||| |||||||| ||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATA-AAT-- 13193 Query 1111 TATTTGAATATT-GTGCGTGA-ATTCACTTGCCACGGTTGTTTGC---AATACATCGTAC 1165 |||||| || | | ||| ||||| | | | ||||||| | ||||| | | Sbjct 13194 --ATTGAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAAT 13251 Query 1166 AAAACATGATTGACTGCCCTAATTACATTGTTAATTGAAATTACGCCTATTCTATACAAA 1225 || |||| | || || ||||| | ||||||||| ||| || |||| || | ||| Sbjct 13252 AATACATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAA 13311 Query 1226 TATTTCATAATCTGCTTCCTAAATACGTTTAAGAAAAGACCAGTCGGAGGGCGTGAGATC 1285 ||||||| | | ||||||| ||||||||| |||||||| ||| | Sbjct 13312 AATTTCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGA 13371 Query 1286 GTCCAGACCCTGAAGTTCATGAAACATTTGTGAATCCCCAATTCCTTCCTGAGGTTGTAG 1345 |||| || | ||||||| | |||| |||||||| || ||||||||| ||||||| | Sbjct 13372 GTCCTGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGG 13431 Query 1346 TTGAATCTTATCTGCATCTC 1365 ||||||| || || || || Sbjct 13432 TTGAATCGAATTTGTATTTC 13451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8806336167085