Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_029648.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq19028 214 3e-52 >seq19028 Length=31091 Score = 214 bits (236), Expect = 3e-52 Identities = 262/355 (74%), Gaps = 7/355 (2%) Strand=Plus/Plus Query 1643 TTCCTCGTCTAGGAATTCTTTATAACTGCTGTTTGGACCAGGATTGCAGAGGAAGATTGT 1702 |||||| || ||||| |||||||| ||| | |||||||||||||| | ||||||||| Sbjct 13833 TTCCTCCTCGAGGAACTCTTTATAGCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGT 13892 Query 1703 TGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTACTTT---GTGTTGGATTGCCAGTC 1759 |||||||| || || || | || ||| | ||||| ||| || |||| ||| | Sbjct 13893 CGGTATCCCACCCTTTATCTTTACAGGCCTTCCGTATTTTACCTTGCTGGA---CCAATT 13949 Query 1760 CCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTGAGAAAATGCGGGTCGACGTCATCAAT 1819 |||||||||||||| |||||||||||||| || ||| ||||||| ||||||| |||||| Sbjct 13950 GCTTTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGATAATGCGGATCGACGTTATCAAT 14009 Query 1820 GACATTATACCAGGCGTCGTTACTGTAGACCTTGGGACTCAGGTCCAGATGTCCACACAA 1879 || ||||||||||| | || || | || | ||| || | ||| || || | Sbjct 14010 GATGTTATACCAGGCATTATTTGAATAAATTTTATTATTCAAATCTAAATGACCGCATAG 14069 Query 1880 ATAGTTATGTGGTCCCAATGACCTAGCCCACATCGTCTTCCCCGTACGACTATCTCCTTC 1939 || ||||||||||| || || || |||||| |||||||| || | | || || || Sbjct 14070 GTAATTATGTGGTCCTAAAGATCTTGCCCACTCTGTCTTCCCTGTTCTAGACTCACCCTC 14129 Query 1940 AATCACTATACTTTGAGGTC-TGTGTGGCCGCGCAGCGGCATCGACAACGTTTTC 1993 ||| || ||||| | |||| | |||||||||||||||||| ||| ||||| Sbjct 14130 AATGACAATACTCTTGGGTCGTTAATGGCCGCGCAGCGGCATCCCTAACATTTTC 14184 Score = 129 bits (142), Expect = 1e-26 Identities = 247/361 (68%), Gaps = 5/361 (1%) Strand=Plus/Plus Query 951 GAATCATTCTGAGAATGCTTTAATGTTGTATATGGCGTGTACTCACGCCTCTAACCCAGT 1010 || |||| |||| ||||| || ||||||||| | ||||| || ||||| || || Sbjct 13080 GACTCATACTGAAAATGCATT---GTTGTATATTAGTTCAACTCATGCATCTAATCCTGT 13136 Query 1011 GTATGCTACCTTGAAGATACGGATCTACTTCTATGATTCCGTGACAAATTAATAAATATT 1070 ||| ||| ||| | ||| | || || ||||| || |||||||||||||||| Sbjct 13137 ATATTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATT 13196 Query 1071 GAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGGATTACATTGTACAATAC 1130 |||||||||||| ||||| | ||||| || ||||| | ||||||||| | ||||| Sbjct 13197 GAATTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATAC 13256 Query 1131 ATGTTCTACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTC-AGATATT 1189 || ||||||||| |||||| ||||| ||| ||||| | || | || | | ||| Sbjct 13257 ATTGTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTA-ATCGGTCTAAAAATT 13315 Query 1190 TGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCTGAGGCTGTAAGGTCGTCC 1249 | | || | ||| ||||| |||||||||| ||| |||| |||| |||| Sbjct 13316 TCATTACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCC 13375 Query 1250 AGATTCGGAAGGCTAGAAAACACTTGTGCAGTCCCAGAGCTTTCCGAGTGTTGTAGTTGA 1309 ||| |||| || ||| ||||| || ||| | |||| ||||| ||||| Sbjct 13376 TGATCTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGA 13435 Query 1310 A 1310 | Sbjct 13436 A 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681674335052