Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_029804.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq19028 385 8e-104 >seq19028 Length=31091 Score = 385 bits (426), Expect = 8e-104 Identities = 760/1118 (68%), Gaps = 71/1118 (6%) Strand=Plus/Plus Query 983 TCATACGGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCGTCAAATCCTGTGTA 1042 |||||| |||||||| ||||||| |||| | |||||||| || |||||||| || Sbjct 13083 TCATACTGAAAATGCATTGTTGT---ATATTAGTTCAACTCATGCATCTAATCCTGTATA 13139 Query 1043 TGCTACTTTGAAAATACGCATCTATTTTTATGATGCTGTGACGAATTAATAAATAAGAAA 1102 | |||| ||| || ||||| ||||||||||| ||| | |||||||||||| || Sbjct 13140 TTGTACTATGAGAACACGCAGTTATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1103 TTTTATTTCATGACTCTCTTTAACCTCGAGAGTATTTGGGAATACATTGTATAAAACATG 1162 ||||||||||||| || || || | || | | ||||||| |||| |||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1163 ATCGACTGATCTAATAACATTGTTAATTGAAATAACTCCTAAGTTATCTAAATATCTGAT 1222 || || | |||||||| ||||||||| |||||| ||||| |||||| || | || Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1223 AAGCTCAGATTTAAAGGCTGTTAAGAAACGACCAGTCTTCGTCTGTGATCTCGTCCAGAC 1282 | | ||||||| || |||||||| ||| | || | | |||| || Sbjct 13320 TACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1283 CTTGAAGTTGAGAAAACATTTGTGAATCCCCAATTCCTTCCTGAGGTTGTGGTTGAATCG 1342 |||||||||||| ||| |||||||| || ||||||||| ||||||||||||||||| Sbjct 13380 CTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCG 13439 Query 1343 GATTTGGATTGATATTATGTCG-TGGTTGCTGTTGAAGGGTCTGGACAGGTGGTCTGTTA 1401 ||||| ||| ||||||||| | || | ||| || |||| ||||| | Sbjct 13440 AATTTGTATTTCGATTATGTCGGTTGTCGAATTTGTTGG-TCTGAGATTGTGGTTGAGGA 13498 Query 1402 TCCTGAAATATAGGGG--------ATTTGT----TATCTGCCAG--GTAAAA------AC 1441 || |||||||||| |||| ||| || | ||||| || Sbjct 13499 TCTTGAAATATAGAAACAGCTAATATTTCCCAAATATGTGGTTGACGTAAACGACTAGAC 13558 Query 1442 GCCATTCTGTGCCTGAGGAGCAGTGATGATATCCCCTGTGCGTGAATCCATGGTTGGTGC 1501 ||||||| || || ||||||||||| |||||||||||| ||||||| | | Sbjct 13559 GCCATTCATCGCTTGTTGAGCAGTGATGTATTCCCCTGTGCGTATATCCATGACCAGAAC 13618 Query 1502 AGTTAATATGCATATAATAT-GAGCAACCGCAATTAAGATCTATCCTCCGTCGTCTGATA 1560 || |||||| | ||||| || || || ||| || |||| | | || |||||| Sbjct 13619 AGCTAATATTTTTG-AATATTGAACATCCACAAGGCAGGTCTAGTCGTCTTCTTCTGATT 13677 Query 1561 -GTCTTCTTCTTG------GGACCTCT----------GC--------------GTCT--- 1586 |||| ||||||| ||| | | || |||| Sbjct 13678 TGTCT-CTTCTTGATATCCGGATATGTAAATGAGGTTGCTTTCCTTGTATAATGTCTATG 13736 Query 1587 ---CACTTGTGGTA---TTTGGTGA--GAACAATGGCTCTGTGAGTGTGATGAATGTTGC 1638 | ||| | || ||| || ||| ||||| | ||||| ||| |||| ||| Sbjct 13737 CATCCATTGGGATAACATTTCCTGCACGAATAATGGTTGTGTGATGGTGTAGAATTCTGC 13796 Query 1639 ATTCTTGATTGCCCAGAGTTTGAGGGAAGCATTTTTGTCCTCGTCGAGGTACTCTTTATA 1698 ||| | | | ||| ||| | | |||||| ||||| |||||| |||||||||| Sbjct 13797 ATTATGCAAAGACCAATTTTTTAATTTAATATTTTTTTCCTCCTCGAGGAACTCTTTATA 13856 Query 1699 TGATGATGTTGGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCGCCTTTAATTTGAAT 1758 || || ||||| |||||||| | |||||| || |||||||| || || || | | Sbjct 13857 GCTGGAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTAC 13916 Query 1759 TGGCTTCCCGTATTTTGTGTTGCTTTGCCAATTTTGCTGGGCCCCCATGAATTCTTTAAA 1818 ||| | ||||||||| ||||| |||||| ||||||||||| || |||||||| Sbjct 13917 AGGCCTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAA 13976 Query 1819 ATGTTTTAGATAATGCGGGTCTACGTCATCTATGATGTTATACCAGGCATCATTGCTATA 1878 || |||||||||||||| || |||| ||| ||||||||||||||||||| ||| ||| Sbjct 13977 GTGCTTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATA 14036 Query 1879 GACTTTATTATTGAGATCCAGGTGTCCACATAGGTAATTATGTGGACCTAGAGAACGTGC 1938 | ||||||||| | ||| | || || ||||||||||||||||| |||| ||| | ||| Sbjct 14037 AATTTTATTATTCAAATCTAAATGACCGCATAGGTAATTATGTGGTCCTAAAGATCTTGC 14096 Query 1939 CCAAACAGTTTTACCTGTACGACTATCACCTTCAATAACAATACTTTGAGGTC-TCAATG 1997 ||| | || || ||||| | | ||||| ||||| |||||||| | |||| | |||| Sbjct 14097 CCACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATG 14156 Query 1998 GCCGCGCAGCGGGACTCTTAACATTTTGGGAAGCCCAG 2035 |||||||||||| | | ||||||||| | |||||| Sbjct 14157 GCCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAG 14194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8716861666550