Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20melongena_20[genbank_20GCA_5F000787875.1_202014-09-30] 33,873 sequences; 833,080,760 total letters Query= NC_029994.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq19028 150 3e-33 >seq19028 Length=31091 Score = 150 bits (166), Expect = 3e-33 Identities = 264/381 (69%), Gaps = 5/381 (1%) Strand=Plus/Plus Query 962 CATACTGAAAATGCTTTATTATTGTATATGGCTGCCACTCATGCCAGTAATCCAGTTTAT 1021 |||||||||||||| ||| |||||||| | | |||||||| |||||| || ||| Sbjct 13084 CATACTGAAAATGC---ATTGTTGTATATTAGTTCAACTCATGCATCTAATCCTGTATAT 13140 Query 1022 GCTACCTTAAAAATCAG-AGTGTATTTCTACGATTCAGTACAGAATTAATAAAGTTTGAA 1080 ||| | | || | ||| ||||| || || ||| |||||||||| ||||| Sbjct 13141 TGTACTATGAGAACACGCAGT-TATTTTTATGAGAGTGTATCAAATTAATAAATATTGAA 13199 Query 1081 TTTTATATCATGAAGTGTTTGTACATAATCTGTTCCCTCTAATACATTATACAATACATG 1140 |||||| |||||| | |||||| ||||| ||| | |||||| | ||||||| Sbjct 13200 TTTTATTTCATGATATTCAAGTACATCCACTGTTTGCTCAATTACATTGAATAATACATT 13259 Query 1141 ATCAACTGCTCTAATTACATTGTTAATTGAAATTACACCCAAATTATCTAAGTACTTCAA 1200 || || |||||||| | ||||||||| ||| ||||| || ||||| | |||| Sbjct 13260 GTCTACAGCTCTAATAATATTGTTAATACTAATAACACCTAATCGGTCTAAAAATTTCAT 13319 Query 1201 CACTTGGGTCCTAAATACCCTCAAGAAATGCGAGGTCTGAGGATGTAAGTGAGTCCAAAT 1260 || | ||||||| || |||||| | ||| ||||| |||| |||||| || Sbjct 13320 TACACGAAATTTAAATACTCTTAAGAAAACGTATGTCGGAGGACGTAAACGAGTCCTGAT 13379 Query 1261 ATTGAAGGTCAGGAAGCACTTGTGTAGACCCAGTTGAGATCTGAGGTTGTGGTTGAATTG 1320 |||||| | ||||| ||||| ||| ||||| || ||||||||||||||| | Sbjct 13380 CTTGAAGTTGAGGAAAGCTTTGTGAAGATTCAGTTCCTTCCTCAGGTTGTGGTTGAATCG 13439 Query 1321 TATCTGTACAGTTATTATGTC 1341 || |||| |||||||| Sbjct 13440 AATTTGTATTTCGATTATGTC 13460 Score = 150 bits (166), Expect = 3e-33 Identities = 241/344 (70%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 1681 GACGTTGGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGT 1740 || || || || |||||||| | ||||||||| || || ||||| || || | | || Sbjct 13861 GAAGTAGGACCAGGATTGCACAAGAAGATTGTCGGTATCCCACCCTTTATCTTTACAGGC 13920 Query 1741 TTCCCGTACTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGC 1800 | ||||| || ||||| ||| | |||||||||||||| ||||| ||||||||| Sbjct 13921 CTTCCGTATTTTACCTTGCTGGACCAATTGCTTTGGGCCCCCATAAACTCTTTAAAGTGC 13980 Query 1801 TTTAAGTAGTGGGGATCCACATCATCAATGACGTTGTACCAAGCGTCGTTGCTGTAAACC 1860 |||| || || ||||| || | |||||||| ||| ||||| || | || |||| Sbjct 13981 TTTAGATAATGCGGATCGACGTTATCAATGATGTTATACCAGGCATTATTTGAATAAATT 14040 Query 1861 TTGGGGCTTAAGTCAAGATGGCCACATAGATAGTTATGACGTGGATTTAGTGACCTGGCC 1920 || | || || | ||| || ||||| || |||| |||| || || || ||| Sbjct 14041 TTATTATTCAAATCTAAATGACCGCATAGGTAATTAT---GTGGTCCTAAAGATCTTGCC 14097 Query 1921 CACATAGTTTTCCCTGTCCTGCTATCCCCCTCTATCACAATACTCACAGG-CCTCCACGG 1979 ||| || |||||||| || || ||||| || ||||||||| || | | | || Sbjct 14098 CACTCTGTCTTCCCTGTTCTAGACTCACCCTCAATGACAATACTCTTGGGTCGTTAATGG 14157 Query 1980 GCGCGCAGCGCAATCCCTAACATTCTCGGCAGCCCATGTCTCAA 2023 ||||||||| |||||||||||| || || ||||| ||||| Sbjct 14158 CCGCGCAGCGGCATCCCTAACATTTTCAGCTGCCCAGCACTCAA 14201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8726458211504